CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g67660

Gene name DNA binding / nuclease

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g67660 843091 DNA binding / nuclease F:DNA binding, nuclease activity;P:biological_process unknown;C:unknown;OBPVM S.X. H.G.
0.61 76.7 At4g18520 827584 - F:unknown;P:biological_process unknown;C:unknown;POMFB S.X. H.G.
0.50 65.3 At5g64860 836609 DPE1 (DISPROPORTIONATING ENZYME) Encodes a maltotriose-metabolizing enzyme with chloroplastic α-1,4-glucanotransferase activity. Mutant has altered starch degradation. S.X. H.G.
0.44 57.2 At4g26670 828774 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein F:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:chloroplast, mitochondrial inner membrane presequence translocase complex, chloroplast envelope;MFPO S.X. H.G.
0.29 30.3 At1g80480 844387 PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17) F:unknown;P:unknown;C:plastid chromosome, chloroplast stroma, chloroplast, nucleoid;OBMFPAV S.X. H.G.
0.25 22.6 At2g36250 818197 FTSZ2-1 Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis. It is involved in chloroplast division. S.X. H.G.
0.13 5.8 At2g26900 817231 bile acid:sodium symporter family protein F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport, organic anion transport;C:membrane, chloroplast envelope;OBMPAF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.1 99.6 GSM133709 Short_1-4_control_Rep2_ATH1 GSE5722 Functional Genomics of Ozone Stress in Arabidopsis.
13.4 99.4 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.9 99.3 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.8 99.3 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
12.3 99.3 GSM265862 short 10B GSE10522 Expression data of Arabidopsis thaliana rosettes during chilling
11.8 99.3 GSM133710 Short_1-6_control_Rep3_ATH1 GSE5722 Functional Genomics of Ozone Stress in Arabidopsis.
11.5 99.3 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.2 99.2 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.9 99.2 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.9 99.2 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 5e-1 36 At5g64490 836570 binding F:binding;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 5e-1 36 At4g11170 826718 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:response to ozone, defense response;C:mitochondrion;PMBOFA C.G. S.X.
0.02 5e-1 36 At4g30570 829180 GDP-mannose pyrophosphorylase, putative F:transferase activity, nucleotidyltransferase activity;P:biosynthetic process;C:unknown;BOAMFP C.G. S.X.
0.02 5e-1 36 At3g12920 820477 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:nucleus;MPOV C.G. S.X.
0.01 2e+0 34 At5g14940 831346 proton-dependent oligopeptide transport (POT) family protein F:amino acid transmembrane transporter activity, transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOF C.G. S.X.
0.01 2e+0 34 At5g46510 834694 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-1 36 Glycine max HgAffx.19669.1.S1_at CB825118 - - 9e-8 At2g29580 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 4e+0 32 Hordeum vulgare HK03H13r_at HK03H13r - - 3e+0 At3g63420 AGG1 (Arabidopsis Ggamma-subunit 1) C.G. S.X.
0.04 3e-4 48 Oryza sativa Os08g0236700 AK058766.1 - Conserved hypothetical protein 2e-4 At1g67660 DNA binding / nuclease C.G. S.X.
0.11 5e-8 59 Populus trichocarpa PtpAffx.208631.1.S1_s_at pmrna17131 hypothetical protein - 3e-8 At1g67660 DNA binding / nuclease C.G. S.X.
0.04 6e-1 36 Triticum aestivum TaAffx.1111.1.S1_at CK214451 - - 8e+0 At5g17060 ATARFB1B C.G. S.X.
0.04 7e-13 73 Vitis vinifera 1621525_at CB342932 - - 2e-12 At1g67660 DNA binding / nuclease C.G. S.X.
0.02 6e-2 38 Zea mays Zm.10730.1.A1_at AY106276.1 hypothetical protein LOC100276831 - 5e+0 At5g19315 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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