CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g67330

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At1g67330 843054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB S.X. H.G.
0.75 86.9 At2g25810 817123 TIP4 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA S.X. H.G.
0.67 81.6 At1g27140 839603 ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.67 81.6 At4g19030 827641 NLM1 an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance. S.X. H.G.
0.46 59.8 At1g53830 841820 ATPME2 encodes a pectin methylesterase S.X. H.G.
0.38 46.7 At3g24670 822063 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
82.7 99.9 GSM226548 Slice6JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
75.5 99.9 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
65.7 99.8 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
64.2 99.8 GSM266670 Arabidopsis, root cells, cortex, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
61.9 99.8 GSM184836 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 6 GSE7639 Expression analysis of root developmental zones after treatment with salt
54.4 99.8 GSM184835 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 5 GSE7639 Expression analysis of root developmental zones after treatment with salt
53.7 99.8 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
48.7 99.8 GSM184891 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
47.7 99.8 GSM266665 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
46.9 99.8 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.21 5e-10 65 At1g27930 839686 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB C.G. S.X.
0.05 3e-2 40 At1g33800 840272 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB C.G. S.X.
0.02 1e-1 38 At4g04700 825805 CPK27 member of Calcium Dependent Protein Kinase C.G. S.X.
0.03 1e-1 38 At1g71690 843495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB C.G. S.X.
0.01 4e-1 36 At2g22910 816822 GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein F:amino-acid N-acetyltransferase activity, N-acetyltransferase activity;P:arginine biosynthetic process, amino acid biosynthetic process, metabolic process;C:cytoplasm;BOAFP C.G. S.X.
0.01 7e+0 32 At5g48390 834894 ATZIP4 Defective in meiotic chromosome segregation C.G. S.X.
0.02 7e+0 32 At5g44850 834515 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO C.G. S.X.
0.01 7e+0 32 At5g28340 832919 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POF C.G. S.X.
0.02 7e+0 32 At5g28380 832923 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 6e-1 36 Glycine max GmaAffx.50095.1.S1_at AW102297 - - 4e-7 At1g27930 unknown protein C.G. S.X.
0.09 6e-11 67 Hordeum vulgare Contig19870_at Contig19870 - - 5e-3 At1g67330 unknown protein C.G. S.X.
0.02 3e+0 34 Oryza sativa Os.55623.1.S1_s_at - - - 0 C.G. S.X.
0.09 2e-10 67 Populus trichocarpa PtpAffx.19609.1.A1_at CV260417 hypothetical protein - 2e-10 At1g67330 unknown protein C.G. S.X.
0.03 5e-1 36 Triticum aestivum Ta.24741.1.S1_at CA640952 - - 1e+0 At1g71690 unknown protein C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1622487_at CF215822 hypothetical protein LOC100260885 - 5e-21 At1g09610 unknown protein C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.996.1.A1_at AI857152 - - 3e+0 At5g02230 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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