CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g67210

Gene name proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.63 78.1 At1g67210 843041 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFV S.X. H.G.
1.00 100.0 At1g33220 840216 beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO S.X. H.G.
1.00 100.0 At5g20370 832159 serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At2g12050 3768039 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.91 95.6 At3g56530 824820 anac064 (Arabidopsis NAC domain containing protein 64) F:transcription factor activity;P:regulation of transcription;C:unknown;P S.X. H.G.
0.91 95.6 At3g59790 825148 ATMPK10 member of MAP Kinase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1965.1 100.0 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
80.2 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
76.8 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
71.8 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
67.4 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.5 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.2 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
56.2 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
55.0 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.6 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.43 2e-77 289 At5g38600 833850 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.01 1e-2 42 At1g33610 840255 protein binding F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAV C.G. S.X.
0.03 4e-2 40 At2g17240 816229 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMBPFV C.G. S.X.
0.01 4e-2 40 At1g75220 843859 integral membrane protein, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, membrane;BMFPOAV C.G. S.X.
0.02 2e-1 38 At5g62380 836359 ANAC101 (ARABIDOPSIS NAC-DOMAIN PROTEIN 101) Encodes a NAC-domain transcription factor involved in xylem formation. Induces transdifferentiation of various cells into metaxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids. C.G. S.X.
0.01 2e-1 38 At5g61450 836266 2-phosphoglycerate kinase-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMAPFB C.G. S.X.
0.02 2e-1 38 At3g46880 823841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.01 2e-1 38 At3g45850 823728 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOBFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-3 44 Glycine max GmaAffx.67734.1.S1_at BF594968 - - 1e-6 At5g38600 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare EBro03_SQ005_I09_at EBro03_SQ005_I09 - - 8e-1 At1g50720 stigma-specific Stig1 family protein C.G. S.X.
0.02 1e+0 36 Oryza sativa Os02g0178700 AK110943.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 5e-1 At2g40475 unknown protein C.G. S.X.
0.15 1e-12 75 Populus trichocarpa PtpAffx.215436.1.S1_at pmrna29626 hypothetical protein - 5e-13 At1g67210 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.29109.1.S1_at CA650117 - - 9e-1 At1g26600 CLE9 (CLAVATA3/ESR-RELATED 9) C.G. S.X.
0.02 3e-3 42 Vitis vinifera 1621262_at CD008912 - - 6e-3 At1g67210 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein C.G. S.X.
0.03 3e-1 36 Zea mays ZmAffx.873.1.A1_at AI770779 - - 5e-2 At4g30460 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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