CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g67120

Gene name ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.86 93.1 At1g67120 843032 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding F:nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding;P:regulation of transcription, DNA-dependent, regulation of protein complex assembly;C:chloroplast envelope;OMBFPVA S.X. H.G.
0.63 78.1 At3g16810 820934 APUM24 (Arabidopsis Pumilio 24) F:RNA binding, binding;P:unknown;C:nucleolus;MFPOB S.X. H.G.
0.59 74.7 At4g26600 828767 nucleolar protein, putative F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA S.X. H.G.
0.59 74.7 At5g12220 831096 las1-like family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.57 73.8 At1g15420 838113 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.56 73.0 At4g02400 828039 - F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;MOFBPVA S.X. H.G.
0.56 73.0 At2g45280 819136 ATRAD51C Encodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions. S.X. H.G.
0.56 73.0 At5g09840 830844 unknown protein F:unknown;P:unknown;C:mitochondrion;PMFOB S.X. H.G.
0.54 69.5 At2g18900 816406 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:unknown;BFMOPA S.X. H.G.
0.52 67.4 At1g10270 837566 GRP23 (GLUTAMINE-RICH PROTEIN23) F:binding;P:embryonic development, cell division;C:nucleus;PMOFBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
107.0 99.9 E-ATMX-13-raw-cel-1556149743
99.6 99.9 E-ATMX-13-raw-cel-1556149823
96.7 99.9 E-ATMX-13-raw-cel-1556149727
91.7 99.9 E-ATMX-13-raw-cel-1556149887
79.9 99.9 E-ATMX-13-raw-cel-1556149791
75.2 99.9 E-ATMX-13-raw-cel-1556149807
73.9 99.9 E-ATMX-13-raw-cel-1556149775
70.0 99.9 E-ATMX-13-raw-cel-1556149935
66.7 99.8 E-ATMX-13-raw-cel-1556149759
53.7 99.8 E-ATMX-13-raw-cel-1556149871
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.00 5e-1 40 At5g19500 832070 tryptophan/tyrosine permease family protein F:amine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF C.G. S.X.
0.00 5e-1 40 At5g16500 831511 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MOPBFVA C.G. S.X.
0.00 5e-1 40 At4g34160 829564 CYCD3 encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1. C.G. S.X.
0.00 5e-1 40 At3g19610 821498 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBF C.G. S.X.
0.00 5e-1 40 At2g17820 816291 ATHK1 (histidine kinase 1) Encodes a member of the histidine kinase family. C.G. S.X.
0.00 5e-1 40 At1g22230 838828 unknown protein F:unknown;P:unknown;C:chloroplast;MOFPVBA C.G. S.X.
0.00 2e+0 38 At5g53800 835461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.00 7e-1 40 Glycine max GmaAffx.2789.1.S1_at AW397677 - - 9e-1 At5g24830 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.00 4e-3 46 Hordeum vulgare Contig16820_at Contig16820 - - 2e+0 At1g15415 - C.G. S.X.
0.01 1e-3 50 Oryza sativa Os10g0456900 AK064571.1 - contains InterPro domain(s): IPR002035 1e-4 At1g67120 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding C.G. S.X.
0.13 6e-29 133 Populus trichocarpa PtpAffx.222227.1.S1_at pmrna39502 hypothetical protein - 5e-29 At1g67120 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding C.G. S.X.
0.00 5e-1 40 Triticum aestivum Ta.24513.1.S1_x_at CA703977 - - 5e+0 At3g01010 UDP-glucose/GDP-mannose dehydrogenase family protein C.G. S.X.
0.00 2e-4 50 Vitis vinifera 1608937_at CF515338 - - 2e-1 At3g53350 myosin heavy chain-related C.G. S.X.
0.00 2e-1 40 Zea mays Zm.15499.1.A1_at AY107766.1 - - 8e-18 At1g60940 SNRK2.10 (SNF1-RELATED PROTEIN KINASE 2.10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
L GO:0043254 Any process that modulates the frequency, rate or extent of protein complex assembly.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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