Gene omics information

Query gene ID At1g66730
Gene name ATP dependent DNA ligase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g66730842991ATP dependent DNA ligase family proteinF:DNA binding, DNA ligase (ATP) activity, ATP binding;P:DNA repair, DNA replication, DNA recombination;C:chloroplast;BOMFAVPS.X.H.G.
0.8894.0At3g58800825049unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PVOS.X.H.G.
0.8391.4At1g17040838274SHA (SH2 DOMAIN PROTEIN A)Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.S.X.H.G.
0.8089.8At5g58760835990DDB2 (damaged DNA-binding 2)F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAS.X.H.G.
0.8089.8At3g07400819928lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOMBS.X.H.G.
0.7989.1At5g25380832610CYCA2core cell cycle genesS.X.H.G.
0.7989.1At2g02090814740ETL1F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:chloroplast;BMOFPVAS.X.H.G.
0.7888.6At3g12140820389emsy N terminus domain-containing protein / ENT domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.7486.1At4g02730828189transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOPBAVS.X.H.G.
0.7486.1At3g59550825124SYN3Encodes an alpha-kleisin protein that is localized primarily in the nucleolus and is essential for megagametogenesis and plays an important role in pollen development. alpha-kleisins are core components of meiotic and mitotic cohesin complexes.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
369.1100.0E-ATMX-35-raw-cel-1574334832
259.6100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
220.2100.0E-ATMX-35-raw-cel-1574334800
180.2100.0E-ATMX-35-raw-cel-1574334816
134.799.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
99.399.9E-MEXP-509-raw-cel-829148597
88.499.9E-MEXP-509-raw-cel-829148420
81.199.9E-MEXP-509-raw-cel-829148348
73.499.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.999.9E-MEXP-509-raw-cel-829148385
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.013e-242At3g44180823540syntaxin-related family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.011e-140At4g02425828030unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMC.G.S.X.
0.011e-140At3g02060821294DEAD/DEAH box helicase, putativeF:transcription factor activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFPAVC.G.S.X.
0.011e-140At2g36650818237-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAVC.G.S.X.
0.011e-140At2g40980818698-F:unknown;P:unknown;C:plasma membrane;BPOC.G.S.X.
0.011e-140At1g531635007796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPVC.G.S.X.
0.011e-140At1g08130837333ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1)Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.C.G.S.X.
0.015e-138At3g09040820057pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.018e-138Glycine maxGma.13603.1.A1_atBM271348--2e+0At5g47230ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5)C.G.S.X.
0.012e-242Hordeum vulgareContig13164_atContig13164--2e+0At5g60553-C.G.S.X.
0.101e-1897Oryza sativaOs01g0685500AK064463.1-ATP-dependent DNA ligase family protein3e-13At1g66730ATP dependent DNA ligase family proteinC.G.S.X.
0.163e-49198Populus trichocarpaPtpAffx.203946.1.S1_atpmrna7787hypothetical protein-8e-50At1g66730ATP dependent DNA ligase family proteinC.G.S.X.
0.016e-138Triticum aestivumTaAffx.107573.1.S1_atCA697850--1e+1At3g57750protein kinase, putativeC.G.S.X.
0.012e-138Vitis vinifera1616831_atCB978612--4e-1At1g06950TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110)C.G.S.X.
0.019e-136Zea maysZm.5679.1.S1_atCD437138hypothetical protein LOC100216885-3e-3At2g43950OEP37C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006260The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.
CGO:0006281The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
CGO:0006310Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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