Gene omics information

Query gene ID At1g66530
Gene name arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g66530842971arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putativeF:aminoacyl-tRNA ligase activity, nucleotide binding, arginine-tRNA ligase activity, ATP binding;P:arginyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;OBMAFPVS.X.H.G.
0.6781.6At4g29830829105VIP3 (vernalization independence 3)The protein is composed of repeats of WD motif which is involved in protein complex formation. The gene is involved in flower timing and flower development. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Loss of gene function leads to a redistribution of H3K4me3 and K3K36me2 modifications within genes but not a change in the overall abundance of these modifications within chromatin.S.X.H.G.
0.3032.1At3g60830825254ATARP7 (ACTIN-RELATED PROTEIN 7)Encodes an actin-related protein required for normal embryogenesis, plant architecture and floral organ abscission.S.X.H.G.
0.2319.3At1g04190839442tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;OBMPFAS.X.H.G.
0.2217.5At3g62940825469OTU-like cysteine protease family proteinF:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;OMFBPVAS.X.H.G.
0.2014.4At1g25350839120OVA9 (ovule abortion 9)F:glutamine-tRNA ligase activity;P:glutamyl-tRNA aminoacylation, translation, ovule development;C:cytosol;BOMFAPS.X.H.G.
0.1811.4At5g51120835186PABN1 (POLYADENYLATE-BINDING PROTEIN 1)Encodes a homolog of the protein PABN1, a polyadenylation factor subunit.S.X.H.G.
0.146.8At1g24510839066T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:plasma membrane;BOMFPAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
40.199.8GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
34.799.7GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
32.199.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
26.699.7GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.499.5GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.699.4GSM133763Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.699.4GSM133772Lindsey_1-24_torpedo-apical_Rep6_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.399.4GSM142737DH001_ATH1_A4-UNM2GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8502030At4g26300828736emb1027 (embryo defective 1027)F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPVC.G.S.X.
0.019e-136At4g10930826692unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MOFBPC.G.S.X.
0.019e-136At3g22450821816structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:mitochondrion, ribosome, intracellular;PBOMC.G.S.X.
0.014e+034At5g528825008305ATP binding / nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:endomembrane system;BOMFPAVC.G.S.X.
0.014e+034At5g55740835668CRR21 (chlororespiratory reduction 21)Encodes a member of the E+ subgroup of the PPR protein family, containing the E and E+ motifs following a tandem array of PPR motifs. It also contains an unknown motif consisting of 15 aa, which is highly conserved in some PPR proteins, including CRR4. CRR21 is involved in RNA editing of the site 2 of ndhD (ndhD-2),which encodes a subunit of the NDH complex. The RNA editing changes aa 128 from Ser to Leu. Mutants have impaired NDH complex activity.C.G.S.X.
0.014e+034At5g23570832422SGS3 (SUPPRESSOR OF GENE SILENCING 3)Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.C.G.S.X.
0.014e+034At5g58380835951SIP1 (SOS3-INTERACTING PROTEIN 1)Encodes a CBL-interacting protein kinase with similarity to SOS protein kinase.C.G.S.X.
0.014e+034At4g14570827104acylaminoacyl-peptidase-relatedF:serine-type peptidase activity;P:proteolysis;C:chloroplast, vacuole;BOMFPAC.G.S.X.
0.014e+034At4g35970829751APX5 (ASCORBATE PEROXIDASE 5)Encodes a microsomal ascorbate peroxidase APX5. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.162e-861Glycine maxGma.10893.1.S1_atBE659457arginyl-tRNA synthetase-7e-20At4g26300emb1027 (embryo defective 1027)C.G.S.X.
0.181e-22107Hordeum vulgareContig9377_atContig9377--4e-27At4g26300emb1027 (embryo defective 1027)C.G.S.X.
0.209e-1893Oryza sativaOs05g0163000AK066161.1-Arginyl-tRNA synthetase, class Ic family protein2e-20At4g26300emb1027 (embryo defective 1027)C.G.S.X.
0.316e-1893Populus trichocarpaPtp.1743.1.A1_a_atCV271562hypothetical protein-3e-45At4g26300emb1027 (embryo defective 1027)C.G.S.X.
0.211e-1895Triticum aestivumTa.2176.1.S1_atCK206562--1e-25At4g26300emb1027 (embryo defective 1027)C.G.S.X.
0.023e-136Vitis vinifera1611954_atCF516533hypothetical protein LOC100250957-1e+0At4g08260protein phosphatase 2C, putative / PP2C, putativeC.G.S.X.
0.092e-654Zea maysZm.7543.1.A1_atCD997722hypothetical protein LOC100192002-4e-6At1g66530arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putativeC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006420The process of coupling arginine to arginyl-tRNA, catalyzed by arginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
LGO:0006412The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
LGO:0006418The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00067Link to KaPPA-View 4tRNA-charging-pathway

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00970Link to KEGG PATHWAYAminoacyl-tRNA biosynthesis
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