CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g66250

Gene name glycosyl hydrolase family 17 protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.75 86.9 At1g66250 842942 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO S.X. H.G.
0.55 70.6 At2g34190 817980 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV S.X. H.G.
0.51 66.3 At4g15830 827264 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.49 63.5 At3g12870 820470 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P S.X. H.G.
0.48 62.5 At3g53190 824485 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO S.X. H.G.
0.47 61.2 At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. S.X. H.G.
0.46 59.8 At2g26760 817217 CYCB1 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV S.X. H.G.
0.45 58.3 At3g14190 820636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.44 57.2 At3g02640 821289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.44 57.2 At3g25980 822195 mitotic spindle checkpoint protein, putative (MAD2) F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
311.3 100.0 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
155.8 99.9 GSM133756 Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
42.6 99.8 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
42.2 99.8 E-MEXP-1451-raw-cel-1585200330
39.2 99.8 E-MEXP-1451-raw-cel-1585200298
31.9 99.7 E-MEXP-1451-raw-cel-1585200362
23.5 99.6 E-MEXP-728-raw-cel-1062074409
22.5 99.6 E-TABM-19-raw-cel-489757107
22.4 99.6 E-MEXP-728-raw-cel-1062074303
22.3 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.12 2e-7 57 At2g01630 814692 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO C.G. S.X.
0.02 2e-4 48 At5g56590 835760 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall;PFOB C.G. S.X.
0.02 2e-4 48 At4g29360 829057 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane;PFOB C.G. S.X.
0.01 8e-1 36 At1g79630 844302 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PMOFVB C.G. S.X.
0.01 8e-1 36 At1g16220 838190 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:plasma membrane;PMOFBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 1e-6 56 Glycine max GmaAffx.91055.1.S1_at CF806780 - - 4e-7 At1g66250 glycosyl hydrolase family 17 protein C.G. S.X.
0.01 6e+0 32 Hordeum vulgare Contig16135_at Contig16135 - - 2e+1 At5g14730 unknown protein C.G. S.X.
0.02 1e-1 40 Oryza sativa Os03g0221500 AK103138.1 - Glycoside hydrolase, family 17 protein 1e-3 At2g01630 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative C.G. S.X.
0.30 4e-25 117 Populus trichocarpa PtpAffx.202562.1.S1_s_at pmrna5134 hypothetical protein - 2e-25 At1g66250 glycosyl hydrolase family 17 protein C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.105544.1.S1_at CA732967 - - 5e-12 At1g33980 Smg-4/UPF3 family protein C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1614514_at CF405361 hypothetical protein LOC100256478 - 5e+0 At3g25855 unknown protein C.G. S.X.
0.02 3e-1 36 Zea mays ZmAffx.355.1.A1_at AI670542 - - 3e+0 At1g77890 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00436 Callose/glucan degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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