CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g66130

Gene name oxidoreductase N-terminal domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g66130 842927 oxidoreductase N-terminal domain-containing protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOFMAP S.X. H.G.
0.65 79.6 At5g44190 834442 GLK2 (GOLDEN2-LIKE 2) Encodes GLK2, Golden2-like 2, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK1, Golden2-like 1, is encoded by At2g20570. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus. S.X. H.G.
0.36 43.6 At1g64860 842794 SIGA (SIGMA FACTOR A) Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme S.X. H.G.
0.33 38.1 At1g04350 839542 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase S.X. H.G.
0.33 38.1 At2g25080 817046 ATGPX1 (GLUTATHIONE PEROXIDASE 1) Encodes glutathione peroxidase. S.X. H.G.
0.31 33.8 At5g09660 830825 PMDH2 (peroxisomal NAD-malate dehydrogenase 2) encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA. S.X. H.G.
0.30 32.1 At1g29700 839847 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPF S.X. H.G.
0.29 30.3 At1g68010 843129 HPR Encodes hydroxypyruvate reductase. S.X. H.G.
0.28 30.3 At5g61670 836289 - Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons. S.X. H.G.
0.27 26.2 At1g68830 843215 STN7 (Stt7 homolog STN7) STN7 protein kinase; required for state transitions, phosphorylation of the major antenna complex (LHCII) between PSII and PSI, and light adaptation S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.4 99.6 GSM77175 04h low CO2 + light replicate A GSE3423 Carbon fixation (endogenous sugar) and light-dependent gene expression
20.9 99.6 GSM268251 WT-drought-2, biological rep 2 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
20.2 99.6 GSM131220 Scrase-Field_1-4_camta1-2-Col-0_Rep2_ATH1 GSE5618 Comparative transcriptome analysis of wild type and two knockout alleles of At-CAMTA
19.0 99.5 GSM131219 Scrase-Field_1-3_Col-0-wildtype_Rep2_ATH1 GSE5618 Comparative transcriptome analysis of wild type and two knockout alleles of At-CAMTA
18.8 99.5 GSM131218 Scrase-Field_1-2_camta1-2-Col-0_Rep1_ATH1 GSE5618 Comparative transcriptome analysis of wild type and two knockout alleles of At-CAMTA
18.0 99.5 GSM77177 04h low CO2 + dark replicate A GSE3423 Carbon fixation (endogenous sugar) and light-dependent gene expression
16.0 99.5 GSM297392 At.StarchSD.WTSS3.WTR1L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
15.0 99.4 GSM131217 Scrase-Field_1-1_Col-0-wildtype_Rep1_ATH1 GSE5618 Comparative transcriptome analysis of wild type and two knockout alleles of At-CAMTA
14.2 99.4 E-MEXP-1454-raw-cel-1585858145
13.5 99.4 GSM133400 Knight_2-3_sfr6-lt_Rep1_ATH1 GSE5710 Dark-induced gene expression in sfr6
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-2 40 At3g54770 824642 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB C.G. S.X.
0.02 1e-1 38 At5g54800 835570 GPT1 glucose6-Phosphate/phosphate transporter 1 C.G. S.X.
0.01 5e-1 36 At5g20980 832223 ATMS3 (methionine synthase 3) encodes a plastidic methionine synthase, involved in methionine de novo synthesis in the chloroplast C.G. S.X.
0.02 5e-1 36 At3g60870 825258 DNA-binding protein-related F:unknown;P:unknown;C:unknown;PB C.G. S.X.
0.04 5e-1 36 At3g46010 823744 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) Actin-depolymerizing factor (ADF) and cofilin define a family of actin-binding proteins essential for the rapid turnover of filamentous actin in vivo. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max PsAffx.C45000064_at PsAffx.C45000064 - - 3e-1 At4g05553 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig24431_at Contig24431 - - 4e+0 At1g11475 NRPB10 C.G. S.X.
0.03 4e+0 34 Oryza sativa Os06g0200200 9634.m00968 - - 6e-3 At4g20440 smB (small nuclear ribonucleoprotein associated protein B) C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.36725.1.S1_at CV283094 - - 6e+0 At3g52470 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein C.G. S.X.
0.03 4e-2 40 Triticum aestivum TaAffx.92327.1.S1_at BJ270633 - - 9e-1 At5g66815 unknown protein C.G. S.X.
0.07 1e-2 40 Vitis vinifera 1620296_at CF414668 hypothetical protein LOC100266601 - 5e-2 At1g66130 oxidoreductase N-terminal domain-containing protein C.G. S.X.
0.02 9e-1 34 Zea mays Zm.17250.1.S1_at CO532037 hypothetical protein LOC100193434 - 3e+0 At1g68610 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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