Gene omics information

Query gene ID At1g65580
Gene name FRA3 (FRAGILE FIBER3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9195.6At1g65580842869FRA3 (FRAGILE FIBER3)F:inositol or phosphatidylinositol phosphatase activity;P:unknown;C:unknown;MFPOBS.X.H.G.
1.00100.0At1g43130840912LCV2 (LIKE COV 2)F:molecular_function unknown;P:stem vascular tissue pattern formation;C:cellular_component unknown;OBPAS.X.H.G.
0.9195.6At5g07840830677ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:unknown;MOFBPVAS.X.H.G.
0.8391.4At2g32910817853-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFS.X.H.G.
0.7788.0At4g16444827341unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPS.X.H.G.
0.7788.0At4g19185827657integral membrane family proteinF:unknown;P:unknown;C:membrane;BPOAMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
283.2100.0GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
16.499.5GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
15.499.5GSM142623MC002_ATH1_A1.1-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
14.899.4GSM142641MC002_ATH1_A7.1-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.799.4GSM142642MC002_ATH1_A7.2-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.699.4GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
13.299.4GSM142644MC002_ATH1_A8.1-dubos-aihGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.199.4GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.099.4GSM142646MC002_ATH1_A8.3-dubos-aihGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.099.4E-MEXP-1797-raw-cel-1669767976
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.083e-861At1g056308370695PTASE13Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light–stimulated increase in cytosolic calcium ion.C.G.S.X.
0.067e-654At2g43900818994inositol or phosphatidylinositol phosphatase/ inositol-polyphosphate 5-phosphataseF:inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;OMBFPVAC.G.S.X.
0.062e-346At2g31830817740endonuclease/exonuclease/phosphatase family proteinF:inositol or phosphatidylinositol phosphatase activity;P:unknown;C:unknown;MFPOBC.G.S.X.
0.013e-242At1g76780844012-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.011e-140At4g14900827147hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBVC.G.S.X.
0.014e-138At5g03110831797-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PC.G.S.X.
0.014e-138At5g12460831121-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFMOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.105e-1791Glycine maxGmaAffx.17852.1.S1_atBE608780--1e-17At1g65580FRA3 (FRAGILE FIBER3)C.G.S.X.
0.012e-138Hordeum vulgareContig15880_atContig15880--5e-3At1g22940TH1 (THIAMINE REQUIRING 1)C.G.S.X.
0.103e-1689Oryza sativaOs09g0500300AK100152.1-Endonuclease/exonuclease/phosphatase familyprotein6e-34At2g43900inositol or phosphatidylinositol phosphatase/ inositol-polyphosphate 5-phosphataseC.G.S.X.
0.287e-50200Populus trichocarpaPtpAffx.209226.1.S1_atpmrna18235hypothetical protein-2e-50At1g65580FRA3 (FRAGILE FIBER3)C.G.S.X.
0.011e-140Triticum aestivumTaAffx.98800.2.S1_atCA683677--1e+0At3g28440unknown proteinC.G.S.X.
0.038e-652Vitis vinifera1622757_atCF510915hypothetical protein LOC100253200-8e-6At1g65580FRA3 (FRAGILE FIBER3)C.G.S.X.
0.015e-240Zea maysZm.2385.1.S1_atAF531431.1DNA-binding protein-8e-10At1g20693HMGB2 (HIGH MOBILITY GROUP B 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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