CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g65230

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g65230 842830 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB S.X. H.G.
0.83 91.4 At1g70760 843413 CRR23 ((chlororespiratory reduction 23) a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity. S.X. H.G.
0.80 89.8 At1g14150 837974 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast;P S.X. H.G.
0.67 81.6 At2g39470 818532 PPL2 (PsbP-like protein 2) F:calcium ion binding;P:photosynthesis;C:in 6 components;PBO S.X. H.G.
0.63 78.1 At1g19150 838498 LHCA6 PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA, S.X. H.G.
0.60 75.7 At2g01590 814688 CRR3 (CHLORORESPIRATORY REDUCTION 3) Likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located in the membrane fraction of chloroplast. Mutant has impaired NAD(P)H dehydrogenase activity. S.X. H.G.
0.53 68.6 At5g58260 835938 - Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.9 99.2 GSM77178 04h low CO2 + light replicate B GSE3423 Carbon fixation (endogenous sugar) and light-dependent gene expression
10.3 99.2 GSM142873 GW001_ATH1_A18-Warre-Wdr GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
9.9 99.1 GSM131260 AtGen_6-1112_Cold(4°C)-Shoots-0.5h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
9.8 99.1 GSM260957 A5-LLOYD-CON_REP2 GSE10326 Transcriptome analysis of pho3
9.6 99.1 GSM142874 GW001_ATH1_A19-Warre-6dr GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
9.6 99.1 GSM131463 AtGen_6-9511_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
9.6 99.1 GSM260958 A6-LLOYD-CON_REP3 GSE10326 Transcriptome analysis of pho3
9.6 99.1 GSM131464 AtGen_6-9512_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
8.6 99.0 GSM131256 AtGen_6-0612_Control-Shoots-24.0h_Rep2 GSE5620 AtGenExpress: Stress Treatments (Control plants)
8.4 99.0 GSM133787 Brueggemann_A-5-Brueg-Mck_SLD GSE5731 UV-B Responses in Light Grown Plants: Similarities to Biotic Stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-1 36 At5g65780 836707 ATBCAT-5 encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant C.G. S.X.
0.01 4e-1 36 At4g13610 826994 MEE57 (maternal effect embryo arrest 57) F:protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity;P:embryonic development ending in seed dormancy, DNA methylation;C:nucleus;BOMPAFV C.G. S.X.
0.01 2e+0 34 At5g15980 831455 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMBF C.G. S.X.
0.01 2e+0 34 At3g28390 822468 PGP18 (P-GLYCOPROTEIN 18) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-11 71 Glycine max Gma.8182.1.S1_a_at CD401769 - - 5e-12 At1g65230 unknown protein C.G. S.X.
0.04 8e-1 34 Hordeum vulgare Contig8260_s_at Contig8260 - - 2e+0 At1g65230 unknown protein C.G. S.X.
0.02 8e-1 36 Oryza sativa Os01g0105800 AK066672.1 - Conserved hypothetical protein 4e-4 At2g36260 iron-sulfur cluster assembly complex protein, putative C.G. S.X.
0.23 1e-11 71 Populus trichocarpa PtpAffx.37259.1.A1_a_at CV276577 hypothetical protein - 1e-11 At1g65230 unknown protein C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.17334.1.S1_at CA619770 - - 5e-5 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.10 2e-6 52 Vitis vinifera 1611238_at CD799234 hypothetical protein LOC100263239 - 5e-6 At1g65230 unknown protein C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.1132.1.A1_at AW330934 - - 3e+0 At5g18040 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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