CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g65170

Gene name ubiquitin carboxyl-terminal hydrolase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g65170 842824 ubiquitin carboxyl-terminal hydrolase family protein F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PMO S.X. H.G.
0.96 97.3 At2g37610 818338 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.92 96.0 At1g33000 840195 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.92 96.0 At1g23610 838971 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At2g01310 814659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At2g25990 817140 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.90 95.1 At1g23910 839002 - F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.90 95.1 At2g01780 814709 S-locus glycoprotein, putative F:sugar binding;P:recognition of pollen;C:cellular_component unknown;P S.X. H.G.
0.90 95.1 At2g05500 815099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.89 94.6 At5g17950 831662 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
456.5 100.0 E-MEXP-509-raw-cel-829148348
421.0 100.0 E-MEXP-509-raw-cel-829148456
377.0 100.0 E-MEXP-509-raw-cel-829148525
361.8 100.0 E-MEXP-509-raw-cel-829148561
209.1 100.0 E-MEXP-509-raw-cel-829148129
205.5 100.0 E-MEXP-509-raw-cel-829148597
191.6 100.0 E-MEXP-509-raw-cel-829148420
155.6 99.9 E-MEXP-509-raw-cel-829148313
150.8 99.9 E-MEXP-509-raw-cel-829148492
132.4 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 9e-104 377 At1g65140 842821 ubiquitin thiolesterase F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PMO C.G. S.X.
0.52 2e-101 369 At1g65160 842823 ubiquitin carboxyl-terminal hydrolase family protein F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PMO C.G. S.X.
0.01 4e-1 36 At4g19570 827699 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFVA C.G. S.X.
0.01 4e-1 36 At4g12460 826858 ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP C.G. S.X.
0.01 4e-1 36 At1g62970 842599 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:cellular_component unknown;MFOBPVA C.G. S.X.
0.01 4e-1 36 At1g05460 837047 SDE3 (SILENCING DEFECTIVE) Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing. C.G. S.X.
0.01 4e-1 36 At1g59620 842252 CW9 Encodes CW9. C.G. S.X.
0.02 2e+0 34 At5g43190 834337 F-box family protein (FBX6) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Glycine max PsAffx.C108000030_at PsAffx.C108000030 - - 2e+0 At5g15200 40S ribosomal protein S9 (RPS9B) C.G. S.X.
0.03 7e-1 34 Hordeum vulgare EBma05_SQ001_N04_at EBma05_SQ001_N04 - - 1e+0 At2g36410 unknown protein C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.4929.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.214730.1.S1_at pmrna28558 hypothetical protein - 4e+0 At5g28620 protein kinase C-related C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.78979.1.S1_at CA724095 - - 8e-1 At1g65170 ubiquitin carboxyl-terminal hydrolase family protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1621280_at CF204371.1 - - 3e-2 At3g18460 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.5628.1.A1_at BM736222 hypothetical protein LOC100273072 - 2e-11 At4g30620 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006511 The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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