Gene omics information

Query gene ID At1g64780
Gene name ATAMT1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2217.5At1g64780842786ATAMT1encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.S.X.H.G.
0.6075.7At2g27420817287cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFS.X.H.G.
0.3338.1At5g24120832477SIGE (SIGMA FACTOR E)Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.S.X.H.G.
0.2930.3At3g56290824796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.168.8At1g32900840184starch synthase, putativeF:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
59.899.8E-MEXP-635-raw-cel-912819824
56.899.8GSM133825Walters_A-04-Kruger-WH1_REP1GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutant
54.999.8GSM133826Walters_A-05-Kruger-WH2_REP2GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutant
51.099.8E-MEXP-635-raw-cel-912819840
50.099.8GSM133827Walters_A-06-Kruger-WH3_REP3GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutant
44.099.8GSM133823Walters_A-02-Kruger-WL2_REP2GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutant
42.499.8GSM133822Walters_A-01-Kruger-WL1_REP1GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutant
38.899.8GSM297382At.StarchSD.WTSS3.SS3R1L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycle
36.199.7Evans_2-2_col-WT-cold_ATH1
35.399.7GSM297392At.StarchSD.WTSS3.WTR1L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycle
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.231e-39165At3g24300822018AMT1Encodes a plasma membrane localized ammonium transporter.C.G.S.X.
0.238e-38159At3g24290822017AMT1F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPAC.G.S.X.
0.231e-27125At4g13510826983AMT1Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.C.G.S.X.
0.241e-1171At4g28700828988AMT1F:high affinity secondary active ammonium transmembrane transporter activity, ammonium transmembrane transporter activity;P:transport;C:plasma membrane, membrane;OBMFPAC.G.S.X.
0.015e-240At4g19490827690protein bindingPutative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system.C.G.S.X.
0.012e-138At5g57840835894transferase family proteinencodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)C.G.S.X.
0.018e-136At1g80340844374GA3OX2 (GIBBERELLIN 3-OXIDASE 2)Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.C.G.S.X.
0.013e+034At5g58670835981PLC1 (PHOSPHOLIPASE C 1)phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response. There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one).C.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.073e-448Glycine maxGmaAffx.47250.1.S1_atBE822823--1e-4At1g64780ATAMT1C.G.S.X.
0.022e+034Hordeum vulgareContig20708_atContig20708--1e-4At4g13510AMT1C.G.S.X.
0.185e-1997Oryza sativaOs02g06205009630.m03934-High affinity ammonium transporter3e-19At1g64780ATAMT1C.G.S.X.
0.324e-28127Populus trichocarpaPtp.5712.1.S1_atCK113355ammonium transporter-3e-28At1g64780ATAMT1C.G.S.X.
0.163e-31137Triticum aestivumTa.12823.1.S1_atCA638403Ammonium transporter Amt1;1-2e-20At4g13510AMT1C.G.S.X.
0.039e-134Vitis vinifera1610744_atCF415597hypothetical protein LOC100258016-1e+0At2g47170ARF1A1CC.G.S.X.
0.079e-857Zea maysZm.11141.1.S1_atAY106810.1hypothetical protein LOC100272903-1e-7At1g64780ATAMT1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0015696The directed movement of ammonium into, out of, within or between cells. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
XGO:0015843The directed movement of methylammonium into, out of, within or between cells.
XGO:0009624A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode.
CGO:0006810The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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