CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g64500

Gene name glutaredoxin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.30 32.1 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF S.X. H.G.
0.55 70.6 At1g55960 842047 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO S.X. H.G.
0.53 68.6 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins S.X. H.G.
0.50 65.3 At2g15020 815991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.43 55.3 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. S.X. H.G.
0.35 41.6 At1g73870 843723 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO S.X. H.G.
0.33 38.1 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
84.3 99.9 E-ATMX-33-raw-cel-1562596241
62.1 99.8 GSM297382 At.StarchSD.WTSS3.SS3R1L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
59.9 99.8 E-MEXP-1304-raw-cel-1530618514
56.9 99.8 E-MEXP-513-raw-cel-829814366
53.0 99.8 E-MEXP-1304-raw-cel-1530618308
47.1 99.8 GSM253157 2h into an extended night GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
45.9 99.8 GSM297392 At.StarchSD.WTSS3.WTR1L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
44.5 99.8 GSM297387 At.StarchSD.WTSS3.SS3R2L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
44.5 99.8 E-MEXP-1344-raw-cel-1559561683
41.3 99.8 E-MEXP-449-raw-cel-676423067
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e-3 44 At5g13810 831226 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;POMBF C.G. S.X.
0.02 4e-2 40 At5g39865 833983 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:plasma membrane;POMBF C.G. S.X.
0.01 1e-1 38 At1g17060 838276 CYP72C1 (CYTOCHROME P450 72C1) Encodes a protein with similarity to other cytochrome P450's and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes have redundant functions in light responsiveness. SOB7 may function in metabolizing brassinolides. Expressed in leaf, root, stem and silique but expression highest in flower and cauline leaves. Dominant overexpressing plants have dwarf phenotype, short siliques/seeds, rounded dark green leaves and short hypocotyls in light and dark. Loss of function alleles result in plants with long hypocotyls. C.G. S.X.
0.02 5e-1 36 At5g52060 835281 ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1) A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. C.G. S.X.
0.01 5e-1 36 At4g16144 827303 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.03 5e-1 36 At3g57070 824874 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:chloroplast;OPMBF C.G. S.X.
0.01 5e-1 36 At3g15380 820777 choline transporter-related F:unknown;P:biological_process unknown;C:plasma membrane;MOFP C.G. S.X.
0.02 5e-1 36 At3g20030 821542 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 5e-1 36 At2g07560 815329 AHA6 (Arabidopsis H(+)-ATPase 6) F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-6 54 Glycine max Gma.13278.1.A1_at CD391349 - - 1e-6 At1g64500 glutaredoxin family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HU12O16u_at HU12O16u - - 3e-1 At3g55920 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative C.G. S.X.
0.03 7e-2 40 Oryza sativa Os07g0159900 AK062586.1 - Glutaredoxin domain containing protein 2e-3 At2g35960 NHL12 C.G. S.X.
0.04 2e-1 38 Populus trichocarpa PtpAffx.201400.1.S1_at pmrna2758 hypothetical protein - 4e-12 At4g10630 glutaredoxin family protein C.G. S.X.
0.02 6e-1 36 Triticum aestivum TaAffx.24851.1.S1_at CA711013 - - 2e-1 At1g64500 glutaredoxin family protein C.G. S.X.
0.04 2e-4 46 Vitis vinifera 1609266_at BQ792539 similar to glutaredoxin family protein - 5e-6 At5g13810 glutaredoxin family protein C.G. S.X.
0.03 9e-1 34 Zea mays Zm.17613.1.A1_at CK368144 - - 5e+0 Atmg00530 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0045454 Any process that maintains the redox environment of a cell or compartment within a cell.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage