Gene omics information

Query gene ID At1g64440
Gene name RHD1 (ROOT HAIR DEFECTIVE 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g64440842752RHD1 (ROOT HAIR DEFECTIVE 1)Encodes a protein with UDP-D-glucose 4-epimerase activity. Mutants in RHD1 have abnormally shaped root hairs with a bulbous region at the base. Allelic to REB1 encoding a UDP-D-glucose 4-epimerase involved in cell wall biosynthesis.Involved in growth and cell wall carbohydrate biosynthesis.S.X.H.G.
0.5469.5At3g51460824309RHD4 (ROOT HAIR DEFECTIVE4)Encodes RHD4 (ROOT HAIR DEFECTIVE4), a phosphatidylinositol-4-phosphate phosphatase required for root hair development.S.X.H.G.
0.4862.5At4g34640829616SQS1 (SQUALENE SYNTHASE 1)Encodes squalene synthase, which converts two molecules of farnesyl diphosphate (FPP) into squalene via an intermediate: presqualene diphosphate (PSPP). It is generally thought to be one of the key enzymes of sterol biosynthesis, since it catalyzes the first pathway-specific reaction of the sterol branch of the isoprenoid pathway.S.X.H.G.
0.4761.2At3g52200824385LTA3dihydrolipoamide S-acetyltransferase (LTA3) mRNA, nuclearS.X.H.G.
0.4761.2At1g26640839204aspartate/glutamate/uridylate kinase family proteinF:molecular_function unknown;P:amino acid biosynthetic process;C:cellular_component unknown;BAOPMS.X.H.G.
0.4761.2At1g47290841132AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1)Encodes an enzyme with 3β-hydroxysteroid dehydrogenase/C4-decarboxylase activity in vitro. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the Arabidopsis gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound.S.X.H.G.
0.4659.8At1g60070842301binding / clathrin binding / protein binding / protein transporterF:protein transporter activity, protein binding, clathrin binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:membrane coat, Golgi apparatus part, Golgi apparatus, clathrin adaptor complex;MFOPBS.X.H.G.
0.4558.3At4g31340829261myosin heavy chain-relatedF:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPAVS.X.H.G.
0.4457.2At1g14830838048ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C)Encodes a dynamin-like protein that is involved in mitochondrial morphogenesis and pollen development. Protein is localized as speckles in the cytoplasm, partially co-localizes with mitochondrial markers, cell plate of dividing cells, and the tip of root hairs, root cap cells, and expanding part of trichoblasts.S.X.H.G.
0.4355.3At3g05420819707ACBP4 (ACYL-COA BINDING PROTEIN 4)Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
32.999.7GSM266675Arabidopsis, root cells, stele, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
31.699.7GSM265423Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
27.599.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
26.499.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.699.7GSM184896Arabidopsis, root cells, cortex, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
25.299.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
25.299.6GSM184895Arabidopsis, root cells, cortex, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
24.699.6GSM266677Arabidopsis, root cells, stele, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
23.799.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.999.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.453e-36153At4g23920828492UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in growth and cell wall carbohydrate biosynthesis.C.G.S.X.
0.495e-35149At4g10960826696UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5)Encodes a protein with UDP-D-glucose 4-epimerase activity.C.G.S.X.
0.102e-344At1g12780837834UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.C.G.S.X.
0.098e-342At1g63180842622UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3)Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in pollen development.C.G.S.X.
0.053e-240At3g28530822483UDP-glucose 4-epimeraseF:UDP-glucose 4-epimerase activity;P:galactose metabolic process;C:cellular_component unknown;PC.G.S.X.
0.035e-136At4g22230828317-Encodes a defensin-like (DEFL) family protein.C.G.S.X.
0.025e-136At4g20460827794NAD-dependent epimerase/dehydratase family proteinF:coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity;P:galactose metabolic process, cellular metabolic process, nucleotide-sugar metabolic process, metabolic process;C:endomembrane system;BOPMAFVC.G.S.X.
0.015e-136At2g23300816862leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.182e-1067Glycine maxGma.5150.4.S1_a_atBM887549--5e-11At1g64440RHD1 (ROOT HAIR DEFECTIVE 1)C.G.S.X.
0.157e-1477Hordeum vulgareContig10066_atContig10066UDP-D-glucose epimerase 2-2e-13At1g64440RHD1 (ROOT HAIR DEFECTIVE 1)C.G.S.X.
0.185e-963Oryza sativaOs05g0595100AB087745.1-UDP-glucose 4-epimerase1e-11At4g23920UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)C.G.S.X.
0.396e-1789Populus trichocarpaPtpAffx.200365.1.S1_atpmrna729hypothetical protein-7e-66At4g10960UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5)C.G.S.X.
0.162e-1273Triticum aestivumTa.13087.1.S1_atCA502620--2e-12At1g64440RHD1 (ROOT HAIR DEFECTIVE 1)C.G.S.X.
0.092e-1685Vitis vinifera1614498_atCF213286hypothetical protein LOC100261533-3e-8At4g23920UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)C.G.S.X.
0.142e-23109Zea maysZm.1742.1.S1_atAW424599UDP-glucose 4-epimerase GEPI48-6e-14At4g10960UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0042546The process by which a cell wall is synthesized, aggregates, and bonds together. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
XGO:0010306The chemical reactions and pathways resulting in the formation of rhamnogalacturonan II, a low molecular mass (5 - 10KDa) pectic polysaccharide, conserved in the primary walls of dicotyledenous and monocotyledenous plants and gymnosperms.
XGO:0009969The chemical reactions and pathways resulting in the formation of xyloglucan, the cross-linking glycan composed of 1->4-beta-D glucan backbone substituted at regular intervals with beta-D-xylosyl-1->6 residues, which is present in the primary cell wall of most higher plants.
XGO:0010053The process whereby a relatively unspecialized cell in the root epidermis acquires the specialized features of a trichoblast or atrichoblast.
XGO:0010246The chemical reactions and pathways resulting in the formation of rhamnogalacturonan I component of pectin, a rhamnose-rich pectic polysaccharide.
SGO:0009832The chemical reactions and pathways resulting in the formation of the cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00134Link to KaPPA-View 4UDP-Sugar metabolism



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00052Link to KEGG PATHWAYGalactose metabolism
00520Link to KEGG PATHWAYAmino sugar and nucleotide sugar metabolism
01100Link to KEGG PATHWAYMetabolic pathways
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