Gene omics information

Query gene ID At1g64400
Gene name long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3032.1At1g64400842748long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeF:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAVS.X.H.G.
0.4457.2At5g45000834531transmembrane receptorF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBOS.X.H.G.
0.3133.8At1g51890841616leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.3133.8At4g25110828614AtMC2 (metacaspase 2)F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;POMFBVAS.X.H.G.
0.103.4At4g01720828001WRKY47member of WRKY Transcription Factor; Group II-bS.X.H.G.
0.051.1At4g23300828429protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
84.499.9GSM128683Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
82.799.9GSM128672Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
80.099.9GSM128685Underwood_1-38_E.coli-TUV86-2-fliC-10e8-7h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
77.799.9E-NASC-76-raw-cel-1359879158
71.699.9GSM128686Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
67.999.9E-NASC-76-raw-cel-1359878900
62.099.8GSM128671Underwood_1-24_hrpAfliC-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
60.299.8GSM128664Underwood_1-18_Cor-hrpS-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
59.699.8E-MEXP-1094-raw-cel-1379507313
55.199.8E-NASC-76-raw-cel-1359878976
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.287e-48192At4g23850828484long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetaseF:catalytic activity;P:fatty acid biosynthetic process;C:plasma membrane;BOMFPAVC.G.S.X.
0.392e-32141At4g11030826704long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeF:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAVC.G.S.X.
0.064e-963At1g49430841367LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2)Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation.C.G.S.X.
0.043e-448At2g47240819337long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family proteinEncodes an acyl-CoA synthetase that acts on long-chain and very-long-chain fatty acids, involved in cuticular wax and cutin biosynthesisC.G.S.X.
0.016e-240At3g15180820749proteasome-relatedF:binding;P:biological_process unknown;C:plasma membrane;MPOBC.G.S.X.
0.016e-240At3g05970819767LACS6 (long-chain acyl-CoA synthetase 6)encode peroxisomal long-chain acyl-CoA synthetase (LACS) isozymesC.G.S.X.
0.013e-138At2g30070817558ATKT1 (POTASSIUM TRANSPORTER 1)Encodes a high affinity potassium transporter.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.152e-552Glycine maxGmaAffx.36701.2.S1_atBI786158--3e-6At1g64400long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeC.G.S.X.
0.116e-1375Hordeum vulgareContig7604_atContig7604--3e-22At4g11030long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeC.G.S.X.
0.172e-1689Oryza sativaOs01g0655800AK067776.1-Acyl-CoA synthetase (EC 6.2.1.3)4e-25At4g11030long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeC.G.S.X.
0.312e-30135Populus trichocarpaPtpAffx.6308.1.S1_atCV231508hypothetical protein-2e-30At1g64400long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeC.G.S.X.
0.148e-2099Triticum aestivumTa.8620.1.A1_atBQ162137--4e-20At1g64400long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeC.G.S.X.
0.123e-23109Vitis vinifera1614526_atCD711134--4e-20At4g23850long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetaseC.G.S.X.
0.163e-33143Zea maysZm.3507.1.A1_atCK347589--1e-18At4g11030long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0006633The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00071Link to KEGG PATHWAYFatty acid metabolism
01100Link to KEGG PATHWAYMetabolic pathways
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage