CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g64170

Gene name ATCHX16 (CATION/H+ EXCHANGER 16)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.23 19.3 At1g64170 842721 ATCHX16 (CATION/H+ EXCHANGER 16) member of Putative Na+/H+ antiporter family S.X. H.G.
0.57 73.8 At2g17740 816283 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PO S.X. H.G.
0.57 73.8 At4g12500 826862 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:unknown;POBMVFA S.X. H.G.
0.44 57.2 At2g19190 816436 FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1) Receptor-like protein kinase. Involved in early defense signaling. S.X. H.G.
0.33 38.1 At1g51850 841612 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
261.6 100.0 GSM131113 AtGen_B-41_3-6-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
181.9 100.0 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
164.7 100.0 GSM131141 AtGen_B-27_2-6-4_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
112.2 99.9 GSM142853 MG001_ATH1_A6-Torres-2N6 GSE6176 Impact of Type III effectors on plant defense responses
110.6 99.9 GSM131127 AtGen_B-13_1-6-4_REP1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
97.1 99.9 GSM142829 GM001_ATH1_A11-Torres-5N3 GSE6176 Impact of Type III effectors on plant defense responses
93.6 99.9 GSM131139 AtGen_B-25_2-4-4_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
82.9 99.9 GSM131111 AtGen_B-39_3-4-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
70.3 99.9 GSM128674 Underwood_1-26_hrpA-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
62.2 99.8 GSM128672 Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 5e-9 63 At4g23700 828470 ATCHX17 (CATION/H+ EXCHANGER 17) member of Putative Na+/H+ antiporter family C.G. S.X.
0.04 2e-5 52 At3g53720 824539 ATCHX20 (CATION/H+ EXCHANGER 20) member of Putative Na+/H+ antiporter family. Involved in the osmoregulation through K(+) fluxes and possibly pH modulation of an active endomembrane system in guard cells. C.G. S.X.
0.03 1e-3 46 At3g17630 821030 ATCHX19 (CATION/H+ EXCHANGER 19) member of Putative Na+/H+ antiporter family C.G. S.X.
0.02 2e-2 42 At5g41610 834163 ATCHX18 member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 2e-2 42 At4g10720 826666 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA C.G. S.X.
0.01 8e-2 40 At1g47128 841122 RD21 (responsive to dehydration 21) cysteine proteinase precursor-like protein/ dehydration stress-responsive gene (RD21) C.G. S.X.
0.01 3e-1 38 At4g22200 828311 AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3) Encodes a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation. Expressed in guard cell protoplasts and in the phloem and xylem of aerial portions of the plant. The channel can coassemble with another K+ channel, KAT1, in vitro. In guard cells, AKT2/3 is responsible for the Ca2+ sensitivity of the K+ uptake channel. In the phloem, it regulates the sucrose/H+ symporters via the phloem potential. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 38 Glycine max PsAffx.C31000099_at PsAffx.C31000099 - - 1e+0 At4g09300 - C.G. S.X.
0.01 6e-1 36 Hordeum vulgare Contig20686_at Contig20686 - - 2e+0 At1g12080 unknown protein C.G. S.X.
0.04 4e-2 42 Oryza sativa OsAffx.22646.1.S1_at - - - 0 C.G. S.X.
0.04 2e-9 65 Populus trichocarpa PtpAffx.200392.1.S1_at pmrna784 cation proton exchanger - 3e-23 At5g41610 ATCHX18 C.G. S.X.
0.01 3e-1 38 Triticum aestivum TaAffx.84357.2.A1_at BJ294025 - - 3e-1 At5g56310 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1609902_at CF512480 hypothetical protein LOC100257135 - 3e-16 At3g03960 chaperonin, putative C.G. S.X.
0.01 5e-1 36 Zea mays ZmAffx.656.2.A1_at AI715032 - - 1e+0 At3g27329 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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