CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g64110

Gene name AAA-type ATPase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g64110 842716 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV S.X. H.G.
0.54 69.5 At1g70590 843396 F-box family protein F:binding;P:biological_process unknown;C:chloroplast;BOFMPV S.X. H.G.
0.48 62.5 At5g58760 835990 DDB2 (damaged DNA-binding 2) F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA S.X. H.G.
0.42 53.9 At3g07020 819887 UDP-glucose:sterol glucosyltransferase (UGT80A2) F:transferase activity, transferring glycosyl groups;P:lipid glycosylation, carbohydrate metabolic process, metabolic process;C:plasma membrane, membrane;BMFPOV S.X. H.G.
0.39 48.4 At3g14360 820657 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;FOPBM S.X. H.G.
0.38 46.7 At1g79470 844285 inosine-5'-monophosphate dehydrogenase F:IMP dehydrogenase activity, catalytic activity;P:GMP biosynthetic process, metabolic process;C:unknown;OBMFAPV S.X. H.G.
0.38 46.7 At4g02730 828189 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOPBAV S.X. H.G.
0.36 43.6 At4g31420 829269 zinc finger (C2H2 type) family protein F:transcription factor activity;P:regulation of transcription;C:intracellular;MFOP S.X. H.G.
0.33 38.1 At5g16630 831525 RAD4 F:damaged DNA binding;P:nucleotide-excision repair;C:nucleus, chloroplast;MFOP S.X. H.G.
0.27 26.2 At1g17145 838285 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;FPOM S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
359.8 100.0 E-ATMX-35-raw-cel-1574334816
279.6 100.0 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
166.2 100.0 E-ATMX-35-raw-cel-1574334832
153.8 99.9 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
126.6 99.9 GSM134303 Penfield_1-5_endosperm-ABA_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
111.7 99.9 GSM134302 Penfield_1-4_endosperm-ABA_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
108.6 99.9 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
104.2 99.9 GSM153929 ahg3-1 rep2 GSE6638 Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
101.0 99.9 GSM153927 ahg1-1 rep2 GSE6638 Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
95.0 99.9 GSM134304 Penfield_1-6_endosperm-ABA_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.22 8e-73 276 At5g52882 5008305 ATP binding / nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:endomembrane system;BOMFPAV C.G. S.X.
0.22 3e-69 264 At4g28000 828913 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV C.G. S.X.
0.03 3e-4 48 At4g02480 827979 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV C.G. S.X.
0.02 5e-3 44 At1g02890 839507 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;BOMFPAV C.G. S.X.
0.02 8e-2 40 At4g24860 828589 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;BOMFPAV C.G. S.X.
0.02 3e-1 38 At4g27680 828882 MSP1 protein, putative / intramitochondrial sorting protein, putative F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;OBMFPAV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 3e-14 81 Glycine max GmaAffx.77786.1.S1_at BF424596 - - 8e-85 At4g28000 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding C.G. S.X.
0.16 4e-8 59 Hordeum vulgare Contig10006_at Contig10006 - - 7e-23 At4g28000 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding C.G. S.X.
0.18 7e-13 77 Oryza sativa Os01g0226400 AK102301.1 - AAA ATPase, central region domain containingprotein 2e-45 At5g52882 ATP binding / nucleoside-triphosphatase/ nucleotide binding C.G. S.X.
0.20 2e-43 178 Populus trichocarpa PtpAffx.215345.1.S1_at pmrna29476 hypothetical protein - 6e-92 At5g52882 ATP binding / nucleoside-triphosphatase/ nucleotide binding C.G. S.X.
0.21 6e-15 83 Triticum aestivum Ta.26280.1.S1_at CD490563 - - 1e-46 At5g52882 ATP binding / nucleoside-triphosphatase/ nucleotide binding C.G. S.X.
0.06 2e-12 73 Vitis vinifera 1610151_at CF404642 hypothetical protein LOC100257581 - 1e-13 At4g28000 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding C.G. S.X.
0.04 1e-4 48 Zea mays Zm.6667.1.A1_at AW067052 - - 2e-16 At1g02890 AAA-type ATPase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage