Gene omics information

Query gene ID At1g64060
Gene name ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4659.8At1g64060842710ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.S.X.H.G.
0.8290.9At1g73850843721structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBVS.X.H.G.
0.7888.6At5g47920834843unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.7586.9At4g16790827385hydroxyproline-rich glycoprotein family proteinF:unknown;P:unknown;C:unknown;MPFOBVAS.X.H.G.
0.7184.2At3g14780820706-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBFAVS.X.H.G.
0.7184.2At3g21420821696oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:metabolic process;C:cellular_component unknown;POBFMS.X.H.G.
0.6075.7At5g24800832549BZIP9 (BASIC LEUCINE ZIPPER 9)Encodes bZIP protein BZO2H2.S.X.H.G.
0.4862.5At1g77660844102MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
607.4100.0GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
437.8100.0GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
177.1100.0GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
166.2100.0GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
104.199.9GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
92.899.9GSM311296Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
73.299.9GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
23.299.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.099.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.499.6GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.082e-1275At3g45810823724ferric reductase-like transmembrane component family proteinF:in 8 functions;P:oxidation reduction;C:membrane;MPFOBAC.G.S.X.
0.142e-965At5g51060835179RHD2 (ROOT HAIR DEFECTIVE 2)RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx.C.G.S.X.
0.196e-963At4g11230826725respiratory burst oxidase, putative / NADPH oxidase, putativeF:in 6 functions;P:oxidation reduction;C:integral to membrane, membrane;MFPBOAC.G.S.X.
0.096e-654At5g47910834842RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D)NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.C.G.S.X.
0.076e-654At4g25090828612respiratory burst oxidase, putative / NADPH oxidase, putativeF:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOAC.G.S.X.
0.052e-552At5g07390830630ATRBOHA (respiratory burst oxidase homolog A)F:calcium ion binding;P:defense response;C:intrinsic to plasma membrane;MFPOBAC.G.S.X.
0.061e-346At1g19230838506respiratory burst oxidase protein E (RbohE) / NADPH oxidaseF:in 7 functions;P:defense response;C:integral to membrane, membrane;MFPBOAC.G.S.X.
0.096e-344At5g60010836123FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase/ superoxide-generating NADPH oxidaseF:in 8 functions;P:oxidation reduction;C:integral to membrane, membrane;MPFOBC.G.S.X.
0.039e-240At1g09090837430ATRBOHB (respiratory burst oxidase homolog B)F:in 7 functions;P:response to heat, defense response;C:integral to membrane, membrane;MPFOBAC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.101e-29133Glycine maxGma.6763.1.A1_atBU544794--1e-30At1g64060ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)C.G.S.X.
0.119e-25115Hordeum vulgareContig12420_atContig12420--8e-25At1g64060ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)C.G.S.X.
0.244e-27125Oryza sativaOs05g0528000AK120905.1-RbohAOsp (Fragment)2e-27At1g64060ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)C.G.S.X.
0.506e-87323Populus trichocarpaPtpAffx.200399.1.S1_s_atpmrna802--4e-87At1g64060ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)C.G.S.X.
0.147e-963Triticum aestivumTa.7051.2.S1_atBJ314502--1e-9At1g64060ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)C.G.S.X.
0.014e-136Vitis vinifera1614137_atCF513360--1e-16At1g58200MSL3 (MscS-LIKE 3)C.G.S.X.
0.225e-26119Zea maysZm.4309.1.S1_atAW052961respiratory burst oxidase protein B-1e-25At1g64060ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0002679A phase of elevated metabolic activity, during which oxygen consumption increases made as a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
XGO:0050832Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
XGO:0052542Any process by which callose is transported to, and/or maintained in, a specific location during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls.
XGO:0009723A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus.
XGO:0010119Any process that modulates the frequency, rate or extent of stomatal movement.
XGO:0050665The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA.
XGO:0043069Any process that stops, prevents or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes.
XGO:0006800The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH).
XGO:0006952Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
SGO:0009738A series of molecular signals mediated by the detection of abscisic acid.
SGO:0009873A series of molecular signals mediated by ethylene (ethene).
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage