CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g63880

Gene name disease resistance protein (TIR-NBS-LRR class), putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At1g63880 842692 disease resistance protein (TIR-NBS-LRR class), putative Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans. S.X. H.G.
0.80 89.8 At1g58848 842226 ATP binding / protein binding F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PBMOFA S.X. H.G.
0.75 86.9 At3g44630 823589 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAV S.X. H.G.
0.75 86.9 At3g46530 823806 RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13) Confers resistance to the biotrophic oomycete, Peronospora parasitica. Encodes an NBS-LRR type R protein with a putative amino-terminal leucine zipper. Fungal protein ATR13 induces RPP13 gene expression and disease resistance. S.X. H.G.
0.57 73.8 At2g14080 815893 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMOBFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.0 99.6 GSM131537 ATGE_25_A GSE5630 AtGenExpress: Developmental series (leaves)
21.6 99.6 GSM131539 ATGE_25_C GSE5630 AtGenExpress: Developmental series (leaves)
20.4 99.6 GSM131538 ATGE_25_B GSE5630 AtGenExpress: Developmental series (leaves)
19.9 99.6 E-MEXP-739-raw-cel-1099467453
18.2 99.5 E-MEXP-739-raw-cel-1099467419
17.7 99.5 E-MEXP-739-raw-cel-1099467487
16.4 99.5 GSM142799 SS001_ATH1_A2-Smith-22 GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
15.6 99.5 GSM133737 Buchanan-Wollaston_A-9-bwoll-Co1_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
15.0 99.4 GSM142800 SS001_ATH1_A3-Smith-23 GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
14.8 99.4 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.46 0 886 At1g64070 842711 RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1) Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans. C.G. S.X.
0.61 5e-170 599 At1g63870 842691 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAV C.G. S.X.
0.46 3e-150 533 At2g16870 816188 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.24 8e-132 472 At4g14370 827081 phosphoinositide binding F:phosphoinositide binding;P:signal transduction, defense response;C:intrinsic to membrane;PMOBFVA C.G. S.X.
0.51 2e-83 311 At5g58120 835924 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.30 3e-82 307 At1g56540 842107 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.35 3e-82 307 At1g63740 842678 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.43 2e-73 278 At1g63730 842677 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response;C:intrinsic to membrane;PMBOAF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 38 Glycine max GmaAffx.77482.1.S1_at CD401911 - - 8e-3 At3g11570 unknown protein C.G. S.X.
0.01 7e-1 36 Hordeum vulgare Contig23232_at Contig23232 - - 2e-1 At1g21910 AP2 domain-containing transcription factor family protein C.G. S.X.
0.01 3e+0 36 Oryza sativa OsAffx.25418.1.S1_at - - - 0 C.G. S.X.
0.01 1e-1 40 Populus trichocarpa PtpAffx.63690.1.S1_at CV230923 hypothetical protein - 7e-1 At5g61200 - C.G. S.X.
0.01 4e-1 38 Triticum aestivum Ta.17713.2.S1_at CA623697 - - 2e-2 At3g27170 CLC-B (CHLORIDE CHANNEL B) C.G. S.X.
0.02 8e-6 52 Vitis vinifera 1621681_at CB003394 - - 1e-3 At2g03030 Toll-Interleukin-Resistance (TIR) domain-containing protein C.G. S.X.
0.01 2e-1 38 Zea mays Zm.2463.1.S1_a_at AY108135.1 hypothetical protein LOC100193981 /// hypothetical protein LOC100275076 /// hypothetical protein LOC100278476 - 6e-1 At5g64110 peroxidase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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