Gene omics information

Query gene ID At1g63800
Gene name UBC5 (ubiquitin-conjugating enzyme 5)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.157.8At1g63800842683UBC5 (ubiquitin-conjugating enzyme 5)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPVS.X.H.G.
0.6075.7At1g58180842185carbonic anhydrase family protein / carbonate dehydratase family proteinF:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:mitochondrion;BOPFMAS.X.H.G.
0.3032.1At1g80920844432J8J8 mRNA, nuclear gene encoding plastid protein, completeS.X.H.G.
0.2217.5At5g18630831981lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:endomembrane system;PFOBMVS.X.H.G.
0.2115.8At2g40420818635amino acid transporter family proteinEncodes a putative amino acid transporter.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.099.4GSM158703WT-ESTRADIOL-REP1GSE6954Identification of AGL24 downstream genes by using XVE inducible system
14.699.4GSM134301Penfield_1-3_endosperm-control_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
14.099.4GSM226267WT(Ler)_Dark_replicate1GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
13.199.4GSM158701HY213-MOCK-REP1GSE6954Identification of AGL24 downstream genes by using XVE inducible system
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.701e-123442At5g41340834136UBC4 (UBIQUITIN CONJUGATING ENZYME 4)Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated.C.G.S.X.
0.632e-48192At2g46030819211UBC6 (ubiquitin-conjugating enzyme 6)Ubiquitin conjugating enzyme E2C.G.S.X.
0.041e-344At1g69935843330SHW1 (SHORT HYPOCOTYL IN WHITE LIGHT1)Encodes a nuclear localized serine-arginine-aspartate-rich protein that acts as a negative regulator of photomorphogenesis.C.G.S.X.
0.022e-240At1g74250843765DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:intracellular;MOBFPVAC.G.S.X.
0.027e-238At4g31950829325CYP82C3member of CYP82CC.G.S.X.
0.037e-238At2g36290818200hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:endoplasmic reticulum;BPOFAC.G.S.X.
0.023e-136At5g37430833719unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVAC.G.S.X.
0.013e-136At5g10800830947RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:cellular_component unknown;MOFPBVAC.G.S.X.
0.043e-136At5g59030836020COPT1 (copper transporter 1)encodes a putative copper transport protein that contains copper-binding motif and functionally complements in copper-transport defective yeast strainsC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.671e-81303Glycine maxGmaAffx.88036.1.A1_atBU548882--7e-85At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)C.G.S.X.
0.471e-2099Hordeum vulgareContig10533_atContig10533--4e-20At1g63800UBC5 (ubiquitin-conjugating enzyme 5)C.G.S.X.
0.187e-56218Oryza sativaOs10g0447100AK120481.1-Ubiquitin-conjugating enzyme E2-21 kDa 2 (EC6.3.2.19) (Ubiquitin- protein ligase 5) (Ubiquitincarrier protein 5)2e-34At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)C.G.S.X.
0.515e-62238Populus trichocarpaPtpAffx.49864.1.S1_atCV280846hypothetical protein-1e-81At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)C.G.S.X.
0.415e-46184Triticum aestivumTa.23803.1.A1_atBJ318318--9e-46At1g63800UBC5 (ubiquitin-conjugating enzyme 5)C.G.S.X.
0.473e-69260Vitis vinifera1618265_atCF403167hypothetical protein LOC100244806-8e-86At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)C.G.S.X.
0.422e-49194Zea maysZm.1224.1.A1_atCF634479hypothetical protein LOC100194405-7e-34At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006511The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

04120Link to KEGG PATHWAYUbiquitin mediated proteolysis
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