Gene omics information

Query gene ID At1g63480
Gene name DNA-binding family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7184.2At1g63480842654DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:unknown;PMFOBVS.X.H.G.
0.6075.7At1g63470842653DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFBOS.X.H.G.
0.4050.8At1g80370844377CYCA2F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus, chloroplast;MPOFVBS.X.H.G.
0.3338.1At1g21880838790LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBOFS.X.H.G.
0.2217.5At2g25270817065unknown proteinF:unknown;P:unknown;C:plasma membrane;POBMS.X.H.G.
0.2115.8At3g55660824732ROPGEF6Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.S.X.H.G.
0.1811.4At4g36180829775leucine-rich repeat family proteinF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
75.199.9GSM10446WT 24-Hr Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
75.099.9GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
58.799.8GSM133767Lindsey_1-19_torpedo-basal_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
53.099.8GSM10442WT Ovule 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
47.399.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
46.799.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.299.8GSM10477lec1-1 24-Hr Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
42.799.8GSM10441WT Ovule 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
41.399.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
38.199.8GSM10445WT 24-Hr Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.800767At1g63470842653DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFBOC.G.S.X.
0.032e-344At2g01340814662unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;POC.G.S.X.
0.039e-342At4g12080826816DNA-binding family proteinF:DNA binding;P:unknown;C:mitochondrion, nucleolus, nucleus, cytoplasm;PMFOBVC.G.S.X.
0.039e-342At2g41260818725M17Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.C.G.S.X.
0.023e-240At3g51710824334curculin-like (mannose-binding) lectin family protein / PAN domain-containing proteinF:sugar binding;P:biological_process unknown;C:endomembrane system;PBC.G.S.X.
0.013e-240At1g31810840068actin bindingF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MFBOPVAC.G.S.X.
0.011e-138At3g51120824276DNA binding / nucleic acid binding / protein binding / zinc ion bindingF:protein binding, DNA binding, zinc ion binding, nucleic acid binding;P:histone modification, transcription initiation;C:nucleus;MOPBFVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.045e-240Glycine maxGma.8223.2.S1_a_atBQ299397--4e-6At1g63470DNA-binding family proteinC.G.S.X.
0.031e-344Hordeum vulgareContig6817_atContig6817--2e-2At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)C.G.S.X.
0.031e-346Oryza sativaOs05g01526009633.m00527--1e-1At4g08230glycine-rich proteinC.G.S.X.
0.158e-756Populus trichocarpaPtpAffx.113676.1.S1_atCX172911hypothetical protein-8e-2At1g63470DNA-binding family proteinC.G.S.X.
0.034e-550Triticum aestivumTaAffx.3722.2.S1_s_atCA594125--4e-3At2g21060ATGRP2B (GLYCINE-RICH PROTEIN 2B)C.G.S.X.
0.041e-550Vitis vinifera1620940_atCF201899.1--2e+1At5g66990RWP-RK domain-containing proteinC.G.S.X.
0.036e-238Zea maysZmAffx.967.1.S1_s_atAI668376Hypothetical protein LOC100193584-1e+1At5g29613unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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