Gene omics information

Query gene ID At1g63400
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g63400842646pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAS.X.H.G.
0.3541.6At2g43310818932unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.2217.5At2g16260816122-pseudogene of glycine-rich RNA-binding proteinS.X.H.G.
0.2014.4At3g04490819605unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
0.071.9At5g53430835424SDG29 (SET DOMAIN GROUP 29)Homology Subgroup III; Orthology Group 2 - A putative histone methyltransferase (predicted to methylate H3K4) related to the Drosophila trithorax group proteins TRX and TRR and the yeast gene SET1. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.S.X.H.G.
0.061.4At2g19280816445pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
299.4100.0GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
268.2100.0GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
172.3100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
168.8100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
147.999.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
139.499.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
113.999.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
101.299.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
89.399.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
86.399.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8702270At1g62590842556pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.6002042At1g62910842592pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:unknown;POMFBAC.G.S.X.
0.7701846At1g63130842617pentatricopeptide (PPR) repeat-containing proteinTransacting siRNA generating locus. Its derived siR9as targets AT1G62930 for cleavage. Itself is targeted by TAS2-derived ta-siR2140 for cleavage.C.G.S.X.
0.7601776At1g62930842594-F:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.7701750At1g63080842611pentatricopeptide (PPR) repeat-containing proteinTransacting siRNA generating locus. Is targeted by TAS2-derived ta-siR2140 for cleavage.C.G.S.X.
0.7701552At1g63330842639pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.7501491At1g62670842564pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.7901358At1g63150842619pentatricopeptide (PPR) repeat-containing proteinTransacting siRNA generating locus.C.G.S.X.
0.720757At1g63070842610pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-138Glycine maxHgAffx.20306.1.S1_atBI749447--3e+0At4g11175translation initiation factor IF-1, chloroplast, putativeC.G.S.X.
0.012e+034Hordeum vulgareContig24536_atContig24536--1e-3At5g58010basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.014e-138Oryza sativaOs08g03072009636.m02109-Protein prenyltransferase domain containingprotein4e-1At1g63130pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.028e-240Populus trichocarpaPtpAffx.215428.1.S1_atpmrna29603hypothetical protein-3e-22At5g38730pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.024e+034Triticum aestivumTaAffx.65000.1.S1_atBJ271762--1e+0At1g62680-C.G.S.X.
0.021e+034Vitis vinifera1614604_atCB972348hypothetical protein LOC100258631-4e+0At4g11220BTI2 (VIRB2-INTERACTING PROTEIN 2)C.G.S.X.
0.024e-136Zea maysZmAffx.356.1.A1_atAI670543--3e-3At5g09750HEC3 (HECATE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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