Gene omics information

Query gene ID At1g63210
Gene name RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g63210842626RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulatorF:transcription elongation regulator activity, protein binding, hydrolase activity, acting on ester bonds, RNA binding;P:regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;BMOFPAS.X.H.G.
1.00100.0At1g64260842731zinc finger protein-relatedF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
1.00100.0At5g14070831256ROXY2Encodes glutaredoxin ROXY2. ROXY2, together with ROXY1 (AT3G02000), controls anther development. roxy1 roxy2 double mutants are sterile and do not produce pollen.S.X.H.G.
0.9697.3At3g53380824506lectin protein kinase family proteinF:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.9296.0At2g37560818332ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2)Origin Recognition Complex subunit 2. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts strongly with all ORC subunits.S.X.H.G.
0.8894.0At1g30660839946nucleic acid bindingF:nucleic acid binding;P:DNA modification, DNA metabolic process;C:unknown;OBVPAS.X.H.G.
0.8491.9At4g17350827447phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFOS.X.H.G.
0.8290.9At1g10330837572pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFS.X.H.G.
0.7284.8At2g28620817411kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAVS.X.H.G.
0.6982.9At1g24470839063short-chain dehydrogenase/reductase (SDR) family proteinEncodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
1996.5100.0GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
93.299.9GSM270865Arabidopsis cell culture, 4 h_control_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1
88.799.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
77.799.9GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
72.499.9GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.580706At1g65440842855GTB1Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.C.G.S.X.
0.011e-140At5g49400835000zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOFPVAC.G.S.X.
0.011e-140At2g02960814825zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.016e-138Glycine maxGma.678.2.S1_atBG045641--2e-2At2g41430ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15)C.G.S.X.
0.024e-344Hordeum vulgareContig19444_atContig19444--1e+0At5g48280unknown proteinC.G.S.X.
0.012e-140Oryza sativaOs07g01180009635.m00174-NB-ARC domain containing protein7e-1At3g04940CYSD1 (CYSTEINE SYNTHASE D1)C.G.S.X.
0.198e-1687Populus trichocarpaPtpAffx.206036.1.S1_s_atpmrna11960global transcription factor group-2e-31At1g65440GTB1C.G.S.X.
0.012e+036Triticum aestivumTaAffx.53788.1.S1_atCA689138--2e-1At1g80133unknown proteinC.G.S.X.
0.012e+034Vitis vinifera1622581_atCF208711--2e-1At5g44820unknown proteinC.G.S.X.
0.012e-138Zea maysZm.6960.1.S1_a_atCF636910hypothetical protein LOC100273814-5e-9At2g47380cytochrome c oxidase subunit Vc family protein / COX5C family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006139The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.
LGO:0006357Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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