CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g63210

Gene name RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g63210 842626 RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator F:transcription elongation regulator activity, protein binding, hydrolase activity, acting on ester bonds, RNA binding;P:regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;BMOFPA S.X. H.G.
1.00 100.0 At1g64260 842731 zinc finger protein-related F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
1.00 100.0 At5g14070 831256 ROXY2 Encodes glutaredoxin ROXY2. ROXY2, together with ROXY1 (AT3G02000), controls anther development. roxy1 roxy2 double mutants are sterile and do not produce pollen. S.X. H.G.
0.96 97.3 At3g53380 824506 lectin protein kinase family protein F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.92 96.0 At2g37560 818332 ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) Origin Recognition Complex subunit 2. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts strongly with all ORC subunits. S.X. H.G.
0.88 94.0 At1g30660 839946 nucleic acid binding F:nucleic acid binding;P:DNA modification, DNA metabolic process;C:unknown;OBVPA S.X. H.G.
0.84 91.9 At4g17350 827447 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFO S.X. H.G.
0.82 90.9 At1g10330 837572 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF S.X. H.G.
0.72 84.8 At2g28620 817411 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV S.X. H.G.
0.69 82.9 At1g24470 839063 short-chain dehydrogenase/reductase (SDR) family protein Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1996.5 100.0 GSM133760 Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
111.0 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
101.6 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
93.2 99.9 GSM270865 Arabidopsis cell culture, 4 h_control_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
91.3 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
88.7 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
82.6 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
78.0 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
77.7 99.9 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
72.4 99.9 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.58 0 706 At1g65440 842855 GTB1 Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. C.G. S.X.
0.01 1e-1 40 At5g49400 835000 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOFPVA C.G. S.X.
0.01 1e-1 40 At2g02960 814825 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e-1 38 Glycine max Gma.678.2.S1_at BG045641 - - 2e-2 At2g41430 ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15) C.G. S.X.
0.02 4e-3 44 Hordeum vulgare Contig19444_at Contig19444 - - 1e+0 At5g48280 unknown protein C.G. S.X.
0.01 2e-1 40 Oryza sativa Os07g0118000 9635.m00174 - NB-ARC domain containing protein 7e-1 At3g04940 CYSD1 (CYSTEINE SYNTHASE D1) C.G. S.X.
0.19 8e-16 87 Populus trichocarpa PtpAffx.206036.1.S1_s_at pmrna11960 global transcription factor group - 2e-31 At1g65440 GTB1 C.G. S.X.
0.01 2e+0 36 Triticum aestivum TaAffx.53788.1.S1_at CA689138 - - 2e-1 At1g80133 unknown protein C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1622581_at CF208711 - - 2e-1 At5g44820 unknown protein C.G. S.X.
0.01 2e-1 38 Zea mays Zm.6960.1.S1_a_at CF636910 hypothetical protein LOC100273814 - 5e-9 At2g47380 cytochrome c oxidase subunit Vc family protein / COX5C family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006139 The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.
L GO:0006357 Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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