CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g62980

Gene name ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.76 87.4 At1g62980 842601 ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18) Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) S.X. H.G.
0.94 96.7 At5g22410 832302 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.93 96.4 At4g25790 828684 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBVA S.X. H.G.
0.91 95.6 At4g30320 829155 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.90 95.1 At4g25820 828687 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer. S.X. H.G.
0.89 94.6 At5g19800 832100 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVA S.X. H.G.
0.89 94.6 At5g24313 832499 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.89 94.6 At5g61650 836287 CYCP4 The P-type cyclins (CYCPs) share a conserved central region of 100 amino acids ('cyclin box') displaying homology to the corresponding region of the PHO80 cyclin from Saccharomyces cerevisiae and the related G1 cyclins from Trypanosoma cruzi and T. brucei. S.X. H.G.
0.88 94.0 At4g33730 829515 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.88 94.0 At5g67400 836876 peroxidase 73 (PER73) (P73) (PRXR11) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
342.2 100.0 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
223.2 100.0 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
207.1 100.0 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
185.6 100.0 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
154.2 99.9 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
143.3 99.9 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
139.2 99.9 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
133.0 99.9 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
127.5 99.9 GSM184838 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8 GSE7639 Expression analysis of root developmental zones after treatment with salt
115.0 99.9 GSM133983 Birnbaum_1-13_StageIII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.48 6e-31 135 At1g12560 837813 ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell. C.G. S.X.
0.08 2e-3 44 At2g39700 818553 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. C.G. S.X.
0.06 2e-2 40 At5g02260 831736 ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) C.G. S.X.
0.04 2e+0 34 At3g52090 824372 NRPB11 Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB11 and the E. oli RNA polymerase alpha subunit. C.G. S.X.
0.01 2e+0 34 At3g12680 820448 HUA1 (ENHANCER OF AG-4 1) Member of the floral homeotic AGAMOUS pathway. C.G. S.X.
0.01 6e+0 32 At5g65770 836706 LINC4 (LITTLE NUCLEI4) F:unknown;P:unknown;C:chloroplast;MOBFPAV C.G. S.X.
0.01 6e+0 32 At5g56270 835726 WRKY2 WRKY transcription factor 2 C.G. S.X.
0.01 6e+0 32 At4g34740 829626 ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2) Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage. C.G. S.X.
0.03 6e+0 32 At4g01630 827983 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-2 40 Glycine max GmaAffx.93176.1.S1_s_at CF808901 expansin - 2e-24 At2g28950 ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) C.G. S.X.
0.03 2e-1 36 Hordeum vulgare HVSMEf0012H17r2_at HVSMEf0012H17r2 - - 8e-2 At4g32100 galactosyltransferase C.G. S.X.
0.03 7e-1 36 Oryza sativa Os02g0267700 9630.m01566 - Alpha-expansin OsEXPA14 3e-5 At4g01630 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) C.G. S.X.
0.08 6e-7 56 Populus trichocarpa PtpAffx.200466.1.S1_at pmrna939 - - 4e-7 At1g62980 ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18) C.G. S.X.
0.03 6e-3 42 Triticum aestivum Ta.5046.1.S1_at AY543535.1 expansin EXPA9 - 3e-24 At2g37640 EXP3 C.G. S.X.
0.03 7e-3 40 Vitis vinifera 1619010_s_at BQ794765 similar to expansin - 4e-11 At2g40610 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) C.G. S.X.
0.03 6e-1 34 Zea mays Zm.13728.2.S1_at AY106266.1 - - 1e-14 At3g55500 ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009826 The process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.
C GO:0009828 The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. An example of this is found in Arabidopsis thaliana.
C GO:0009831 The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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