Gene omics information

Query gene ID At1g62940
Gene name ACOS5 (ACYL-COA SYNTHETASE 5)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g62940842596ACOS5 (ACYL-COA SYNTHETASE 5)encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.S.X.H.G.
1.00100.0At1g02050839280chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:unknown;PBOFS.X.H.G.
0.9797.6At4g14080827044MEE48 (maternal effect embryo arrest 48)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;POS.X.H.G.
0.9797.6At4g20420827790tapetum-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.9597.0At1g69500843283electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen bindingF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:pollen exine formation;C:cellular_component unknown;MPFBOAVS.X.H.G.
0.9597.0At3g07450819933protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PS.X.H.G.
0.9597.0At3g42960823352ATA1 (ARABIDOPSIS TAPETUM 1)Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells.S.X.H.G.
0.9597.0At3g52130824377protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PS.X.H.G.
0.9597.0At4g34850829637chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOFS.X.H.G.
0.9597.0At3g23770821959glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
281.4100.0GSM131576ATGE_31_A2GSE5632AtGenExpress: Developmental series (flowers and pollen)
278.9100.0GSM131578ATGE_31_C2GSE5632AtGenExpress: Developmental series (flowers and pollen)
276.0100.0GSM131577ATGE_31_B2GSE5632AtGenExpress: Developmental series (flowers and pollen)
235.9100.0E-MEXP-1592-raw-cel-1617526984
189.7100.0E-TABM-63-raw-cel-681136761
145.899.9E-MEXP-1592-raw-cel-1617526856
141.499.9E-MEXP-1592-raw-cel-1617526888
127.999.9E-MEXP-1592-raw-cel-1617526952
127.699.9E-TABM-63-raw-cel-681136722
124.599.9E-MEXP-1592-raw-cel-1617526920
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.032e-1067At4g051608258644-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeEncodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.C.G.S.X.
0.079e-1065At1g516808415934CL1 (4-COUMARATE:COA LIGASE 1)encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate.C.G.S.X.
0.041e-552At1g650608428144CL3encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.C.G.S.X.
0.025e-240At5g381208337924-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinF:4-coumarate-CoA ligase activity;P:metabolic process;C:unknown;BOFMPAVC.G.S.X.
0.015e-240At2g31770817734zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVC.G.S.X.
0.012e-138At5g40720834072-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOFMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.063e-757Glycine maxGma.4928.1.S1_a_atAF002259.14-coumarate:CoA ligase isoenzyme 2-4e-9At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.034e-446Hordeum vulgareContig4674_atContig4674--5e-2At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.041e-450Oryza sativaOs03g0152400CR279600-4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment)6e-12At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeC.G.S.X.
0.205e-1583Populus trichocarpaPtpAffx.200226.1.S1_atpmrna425acyl:coa ligase-4e-15At1g62940ACOS5 (ACYL-COA SYNTHETASE 5)C.G.S.X.
0.071e-552Triticum aestivumTa.3609.3.S1_a_atBJ208086--5e-6At1g62940ACOS5 (ACYL-COA SYNTHETASE 5)C.G.S.X.
0.044e-342Vitis vinifera1606753_atCF403699hypothetical protein LOC100267198-2e-23At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeC.G.S.X.
0.023e-136Zea maysZm.1074.1.A1_atCF631708--1e+0At1g62940ACOS5 (ACYL-COA SYNTHETASE 5)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0080110The chemical reactions and pathways resulting in the formation of sporopollenin, a primary constituent of the pollen exine layer.
XGO:0046949The chemical reactions and pathways resulting in the formation of acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group.
XGO:0010584The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00061Link to KaPPA-View 4Flavonoids biosynthesis
00064Link to KaPPA-View 4The cinnamate-monolignol pathway/sinapoyl ester biosynthesis
00420Link to KaPPA-View 4Ubiquinone biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00130Link to KEGG PATHWAYUbiquinone and other terpenoid-quinone biosynthesis
00940Link to KEGG PATHWAYPhenylpropanoid biosynthesis
01061Link to KEGG PATHWAYBiosynthesis of phenylpropanoids
01063Link to KEGG PATHWAYBiosynthesis of alkaloids derived from shikimate pathway
01100Link to KEGG PATHWAYMetabolic pathways
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