CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g62940

Gene name ACOS5 (ACYL-COA SYNTHETASE 5)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g62940 842596 ACOS5 (ACYL-COA SYNTHETASE 5) encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile. S.X. H.G.
1.00 100.0 At1g02050 839280 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:unknown;PBOF S.X. H.G.
0.97 97.6 At4g14080 827044 MEE48 (maternal effect embryo arrest 48) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;PO S.X. H.G.
0.97 97.6 At4g20420 827790 tapetum-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.95 97.0 At1g69500 843283 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:pollen exine formation;C:cellular_component unknown;MPFBOAV S.X. H.G.
0.95 97.0 At3g07450 819933 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.95 97.0 At3g42960 823352 ATA1 (ARABIDOPSIS TAPETUM 1) Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells. S.X. H.G.
0.95 97.0 At3g52130 824377 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.95 97.0 At4g34850 829637 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOF S.X. H.G.
0.95 97.0 At3g23770 821959 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
281.4 100.0 GSM131576 ATGE_31_A2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
278.9 100.0 GSM131578 ATGE_31_C2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
276.0 100.0 GSM131577 ATGE_31_B2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
235.9 100.0 E-MEXP-1592-raw-cel-1617526984
189.7 100.0 E-TABM-63-raw-cel-681136761
145.8 99.9 E-MEXP-1592-raw-cel-1617526856
141.4 99.9 E-MEXP-1592-raw-cel-1617526888
127.9 99.9 E-MEXP-1592-raw-cel-1617526952
127.6 99.9 E-TABM-63-raw-cel-681136722
124.5 99.9 E-MEXP-1592-raw-cel-1617526920
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e-10 67 At4g05160 825864 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis. C.G. S.X.
0.07 9e-10 65 At1g51680 841593 4CL1 (4-COUMARATE:COA LIGASE 1) encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate. C.G. S.X.
0.04 1e-5 52 At1g65060 842814 4CL3 encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate. C.G. S.X.
0.02 5e-2 40 At5g38120 833792 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein F:4-coumarate-CoA ligase activity;P:metabolic process;C:unknown;BOFMPAV C.G. S.X.
0.01 5e-2 40 At2g31770 817734 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV C.G. S.X.
0.01 2e-1 38 At5g40720 834072 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-7 57 Glycine max Gma.4928.1.S1_a_at AF002259.1 4-coumarate:CoA ligase isoenzyme 2 - 4e-9 At1g51680 4CL1 (4-COUMARATE:COA LIGASE 1) C.G. S.X.
0.03 4e-4 46 Hordeum vulgare Contig4674_at Contig4674 - - 5e-2 At1g51680 4CL1 (4-COUMARATE:COA LIGASE 1) C.G. S.X.
0.04 1e-4 50 Oryza sativa Os03g0152400 CR279600 - 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment) 6e-12 At4g05160 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative C.G. S.X.
0.20 5e-15 83 Populus trichocarpa PtpAffx.200226.1.S1_at pmrna425 acyl:coa ligase - 4e-15 At1g62940 ACOS5 (ACYL-COA SYNTHETASE 5) C.G. S.X.
0.07 1e-5 52 Triticum aestivum Ta.3609.3.S1_a_at BJ208086 - - 5e-6 At1g62940 ACOS5 (ACYL-COA SYNTHETASE 5) C.G. S.X.
0.04 4e-3 42 Vitis vinifera 1606753_at CF403699 hypothetical protein LOC100267198 - 2e-23 At4g05160 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative C.G. S.X.
0.02 3e-1 36 Zea mays Zm.1074.1.A1_at CF631708 - - 1e+0 At1g62940 ACOS5 (ACYL-COA SYNTHETASE 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0080110 The chemical reactions and pathways resulting in the formation of sporopollenin, a primary constituent of the pollen exine layer.
X GO:0046949 The chemical reactions and pathways resulting in the formation of acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group.
X GO:0010584 The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00061 Flavonoids biosynthesis
00064 The cinnamate-monolignol pathway/sinapoyl ester biosynthesis
00420 Ubiquinone biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00130 Ubiquinone and other terpenoid-quinone biosynthesis
00940 Phenylpropanoid biosynthesis
01061 Biosynthesis of phenylpropanoids
01063 Biosynthesis of alkaloids derived from shikimate pathway
01100 Metabolic pathways
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