CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g62840

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.21 15.8 At1g62840 842584 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.27 26.2 At4g35480 829700 RHA3B Encodes a putative RING-H2 finger protein RHA3b. S.X. H.G.
0.25 22.6 At5g45110 834545 NPR3 (NPR1-LIKE PROTEIN 3) Encodes a paralog of NPR1. Involved in negative regulation of defense responses against bacterial and oomycete pathogens. npr3 mutants has elevated level of PR1 expression. Interacts with TGA2, TGA3, TGA5 and TGA6 in yeast two hybrid assays. S.X. H.G.
0.22 17.5 At2g22500 816783 UCP5 (UNCOUPLING PROTEIN 5) F:binding;P:transport, mitochondrial transport;C:mitochondrion, mitochondrial inner membrane, membrane;MFPO S.X. H.G.
0.22 17.5 At4g25390 828642 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA S.X. H.G.
0.22 17.5 At5g35735 833550 auxin-responsive family protein F:unknown;P:unknown;C:plasma membrane, membrane;PMFOB S.X. H.G.
0.20 14.4 At2g16900 816192 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POMVFBA S.X. H.G.
0.16 8.8 At2g17840 816293 ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. S.X. H.G.
0.05 1.1 At5g54840 835574 SGP1 Monomeric G protein. Expressed in the root quiescent center, flowers, and leaf guard cells and hydathodes. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
248.8 100.0 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
90.7 99.9 E-MEXP-1443-raw-cel-1581869921
72.3 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
62.1 99.8 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
60.6 99.8 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
50.1 99.8 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
49.6 99.8 GSM184920 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
46.1 99.8 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
41.8 99.8 GSM142830 GM001_ATH1_A14-Torres-4N3_repeat2 GSE6176 Impact of Type III effectors on plant defense responses
39.7 99.8 GSM226549 Slice7JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.50 9e-45 180 At1g12320 837786 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.10 1e-6 54 At2g45360 819144 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
0.06 3e-4 46 At3g60780 825249 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.02 3e-1 36 At5g01830 831850 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMFBV C.G. S.X.
0.02 3e-1 36 At4g35230 829676 BSK1 (BR-SIGNALING KINASE 1) Encodes BR-signaling kinase 1 (BSK1), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized. C.G. S.X.
0.02 3e-1 36 At2g34830 818048 WRKY35 (WRKY DNA-binding protein 35) member of WRKY Transcription Factor; Group II-e C.G. S.X.
0.03 1e+0 34 At5g59050 836022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.00 1e+0 34 At5g23110 832375 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding, ATP binding;P:unknown;C:unknown;MPOFVB C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.49912.1.S1_at BG352408 - - 4e-9 At3g47930 ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig24476_at Contig24476 - - 4e+0 At1g62840 unknown protein C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.21628.1.S1_at - - - 0 C.G. S.X.
0.07 7e-3 42 Populus trichocarpa PtpAffx.18170.1.S1_at CV273715 hypothetical protein - 7e-3 At1g62840 unknown protein C.G. S.X.
0.04 3e-1 36 Triticum aestivum Ta.20865.2.S1_at CA625736 - - 8e-2 At1g62840 unknown protein C.G. S.X.
0.04 1e-1 36 Vitis vinifera 1618549_at CF405151 hypothetical protein LOC100241569 - 6e-2 At2g38360 PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4) C.G. S.X.
0.03 1e-1 36 Zea mays Zm.2254.1.S1_at AW330764 hypothetical protein LOC100275361 - 3e-1 At1g62840 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage