Gene omics information

Query gene ID At1g62780
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g62780842577unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PMOBAFS.X.H.G.
0.6982.9At3g26060822203ATPRX Qencodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatusS.X.H.G.
0.6882.2At2g03420814871unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.6378.1At1g43560840939Aty2 (Arabidopsis thioredoxin y2)F:electron carrier activity, protein disulfide oxidoreductase activity;P:glycerol ether metabolic process, cell redox homeostasis;C:chloroplast stroma, chloroplast;BOMPFAVS.X.H.G.
0.6277.3At4g28660828984PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN)Similar to PsbW subunit of photosystem II.S.X.H.G.
0.6075.7At2g23670816898YCF37 (Arabidopsis homolog of Synechocystis YCF37)F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;POS.X.H.G.
0.5974.7At2g21280816667SULAA nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system.S.X.H.G.
0.5974.7At4g18480827580CHLI1Encodes the CHLI subunit of magnesium chelatase which is required for chlorophyll biosynthesis. All four cysteine residues of the protein form two disulfide bonds (Cys102-Cys193 and Cys354-Cys396) under oxidized conditions but are fully reduced by reduction. It was suggested that the redox state of CHLI is regulated in vivo by the change of the redox environment in the chloroplasts probably via the Trx system.S.X.H.G.
0.5873.8At4g17600827479LIL3:1Encodes Lil3:1 (light-harvesting-like) protein. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. A generic LHC motif is present in Lil3:1.S.X.H.G.
0.5773.8At4g24090828509unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPFOMAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.499.5GSM265855long 12AGSE10522Expression data of Arabidopsis thaliana rosettes during chilling
14.699.4GSM133827Walters_A-06-Kruger-WH3_REP3GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutant
14.599.4GSM133826Walters_A-05-Kruger-WH2_REP2GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutant
14.299.4GSM133831Walters_A-10-Kruger-MH1_REP1GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutant
13.599.4GSM133832Walters_A-11-Kruger-MH2_REP2GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutant
13.499.4GSM133833Walters_A-12-Kruger-MH3_REP3GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutant
13.499.4GSM131154AtGen_C-4_1-C-12_REP1_ATH1GSE5616AtGenExpress: Response to Phytophthora infestans
13.399.4GSM133828Walters_A-07-Kruger-ML1_REP1GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutant
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-240At3g26040822201transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFC.G.S.X.
0.019e-238At3g48200823977unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOPC.G.S.X.
0.013e-136At4g30190829142AHA2belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory regions within the C-terminal domC.G.S.X.
0.033e-136At4g12960826908gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFC.G.S.X.
0.023e-136At4g18370827564DEG5 (DEGP PROTEASE 5)Encodes DEG5. Forms a hexamer with DEG8 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII).C.G.S.X.
0.023e-136At1g78440844180ATGA2OX1 (gibberellin 2-oxidase 1)Encodes a gibberellin 2-oxidase.C.G.S.X.
0.011e+034At5g26710832718glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putativeF:glutamate-tRNA ligase activity;P:glutamyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPC.G.S.X.
0.021e+034At4g34420829593unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBC.G.S.X.
0.011e+034At4g20070827752ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase)The gene encoding Arabidopsis thaliana Allantoate Amidohydrolase (AtAAH)which catalyzes the allantoate deiminase reaction (EC expressed in all parts of the plant being consistent with a function in purine turnover in Arabidopsis.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.139e-961Glycine maxGma.6852.1.S1_atBE657459--8e-9At1g62780unknown proteinC.G.S.X.
0.023e+032Hordeum vulgareContig13442_atContig13442--4e-1At2g30560glycine-rich proteinC.G.S.X.
0.033e+034Oryza sativaOsAffx.27009.1.S1_at---0C.G.S.X.
0.101e-1791Populus trichocarpaPtp.6935.1.S1_atCV278673--1e-17At1g62780unknown proteinC.G.S.X.
0.036e+032Triticum aestivumTaAffx.11763.1.A1_atBQ170499--2e-1At1g63120ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)C.G.S.X.
0.178e-1269Vitis vinifera1622813_a_atCB348240hypothetical protein LOC100245386-4e-11At1g62780unknown proteinC.G.S.X.
0.039e+030Zea maysZmAffx.101.1.A1_atAI665502--3e+0At5g24310ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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