CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g62780

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g62780 842577 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PMOBAF S.X. H.G.
0.69 82.9 At3g26060 822203 ATPRX Q encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus S.X. H.G.
0.68 82.2 At2g03420 814871 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.63 78.1 At1g43560 840939 Aty2 (Arabidopsis thioredoxin y2) F:electron carrier activity, protein disulfide oxidoreductase activity;P:glycerol ether metabolic process, cell redox homeostasis;C:chloroplast stroma, chloroplast;BOMPFAV S.X. H.G.
0.62 77.3 At4g28660 828984 PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN) Similar to PsbW subunit of photosystem II. S.X. H.G.
0.60 75.7 At2g23670 816898 YCF37 (Arabidopsis homolog of Synechocystis YCF37) F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;PO S.X. H.G.
0.59 74.7 At2g21280 816667 SULA A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system. S.X. H.G.
0.59 74.7 At4g18480 827580 CHLI1 Encodes the CHLI subunit of magnesium chelatase which is required for chlorophyll biosynthesis. All four cysteine residues of the protein form two disulfide bonds (Cys102-Cys193 and Cys354-Cys396) under oxidized conditions but are fully reduced by reduction. It was suggested that the redox state of CHLI is regulated in vivo by the change of the redox environment in the chloroplasts probably via the Trx system. S.X. H.G.
0.58 73.8 At4g17600 827479 LIL3:1 Encodes Lil3:1 (light-harvesting-like) protein. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. A generic LHC motif is present in Lil3:1. S.X. H.G.
0.57 73.8 At4g24090 828509 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPFOMA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.4 99.5 GSM265855 long 12A GSE10522 Expression data of Arabidopsis thaliana rosettes during chilling
14.6 99.4 GSM133827 Walters_A-06-Kruger-WH3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
14.5 99.4 GSM133826 Walters_A-05-Kruger-WH2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
14.2 99.4 GSM133831 Walters_A-10-Kruger-MH1_REP1 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
13.5 99.4 GSM133832 Walters_A-11-Kruger-MH2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
13.5 99.4 E-MEXP-503-raw-cel-821666147
13.4 99.4 GSM133833 Walters_A-12-Kruger-MH3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
13.4 99.4 GSM131154 AtGen_C-4_1-C-12_REP1_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
13.3 99.4 GSM133828 Walters_A-07-Kruger-ML1_REP1 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
12.2 99.3 E-ATMX-27-raw-cel-1441080604
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-2 40 At3g26040 822201 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.01 9e-2 38 At3g48200 823977 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOP C.G. S.X.
0.01 3e-1 36 At4g30190 829142 AHA2 belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory regions within the C-terminal dom C.G. S.X.
0.03 3e-1 36 At4g12960 826908 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF C.G. S.X.
0.02 3e-1 36 At4g18370 827564 DEG5 (DEGP PROTEASE 5) Encodes DEG5. Forms a hexamer with DEG8 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). C.G. S.X.
0.02 3e-1 36 At1g78440 844180 ATGA2OX1 (gibberellin 2-oxidase 1) Encodes a gibberellin 2-oxidase. C.G. S.X.
0.01 1e+0 34 At5g26710 832718 glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative F:glutamate-tRNA ligase activity;P:glutamyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAP C.G. S.X.
0.02 1e+0 34 At4g34420 829593 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
0.01 1e+0 34 At4g20070 827752 ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase) The gene encoding Arabidopsis thaliana Allantoate Amidohydrolase (AtAAH)which catalyzes the allantoate deiminase reaction (EC 3.5.3.9)is expressed in all parts of the plant being consistent with a function in purine turnover in Arabidopsis. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 9e-9 61 Glycine max Gma.6852.1.S1_at BE657459 - - 8e-9 At1g62780 unknown protein C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig13442_at Contig13442 - - 4e-1 At2g30560 glycine-rich protein C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.27009.1.S1_at - - - 0 C.G. S.X.
0.10 1e-17 91 Populus trichocarpa Ptp.6935.1.S1_at CV278673 - - 1e-17 At1g62780 unknown protein C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.11763.1.A1_at BQ170499 - - 2e-1 At1g63120 ATRBL2 (Arabidopsis thaliana Rhomboid-like 2) C.G. S.X.
0.17 8e-12 69 Vitis vinifera 1622813_a_at CB348240 hypothetical protein LOC100245386 - 4e-11 At1g62780 unknown protein C.G. S.X.
0.03 9e+0 30 Zea mays ZmAffx.101.1.A1_at AI665502 - - 3e+0 At5g24310 ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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