CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g62500

Gene name protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.82 90.9 At1g62500 842547 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBPOFVA S.X. H.G.
0.71 84.2 At4g37750 829931 ANT (AINTEGUMENTA) ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia. S.X. H.G.
0.70 83.5 At5g28640 832968 AN3 (ANGUSTIFOLIA 3) Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors. S.X. H.G.
0.68 82.2 At5g07180 830609 ERL2 (ERECTA-LIKE 2) Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments. S.X. H.G.
0.66 80.1 At1g67040 843024 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.62 77.3 At2g26330 817173 ER (ERECTA) Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. S.X. H.G.
0.62 77.3 At1g02800 839385 ATCEL2 Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. S.X. H.G.
0.60 75.7 At1g44760 841040 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PMO S.X. H.G.
0.59 74.7 At5g08000 830694 E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3) Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose. S.X. H.G.
0.57 73.8 At4g30130 829136 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
64.0 99.8 GSM10453 WT Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
61.0 99.8 GSM131696 ATGE_79_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
57.7 99.8 GSM131694 ATGE_79_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
56.2 99.8 GSM131697 ATGE_81_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
53.9 99.8 GSM131698 ATGE_81_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
53.1 99.8 E-MEXP-728-raw-cel-1062074471
50.4 99.8 E-MEXP-728-raw-cel-1062074538
50.1 99.8 E-MEXP-728-raw-cel-1062073752
49.7 99.8 GSM305284 estradiol induced, biological replicate 2 GSE12137 LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana
49.7 99.8 E-MEXP-728-raw-cel-1062073620
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e-3 44 At5g21280 832258 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MPOFBVA C.G. S.X.
0.04 2e-3 44 At3g22120 821775 CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN) cell wall-plasma membrane linker protein homolog (CWLP) C.G. S.X.
0.04 7e-3 42 At5g19090 832028 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.02 7e-3 42 At3g25590 822146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB C.G. S.X.
0.04 3e-2 40 At5g46730 834716 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA C.G. S.X.
0.03 3e-2 40 At5g56840 835786 DNA-binding family protein F:transcription factor activity, DNA binding, nucleic acid binding;P:regulation of transcription;C:unknown;PO C.G. S.X.
0.01 3e-2 40 At4g18570 827588 proline-rich family protein F:unknown;P:unknown;C:unknown;MPOFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Glycine max PsAffx.C22000021_at PsAffx.C22000021 - - 4e+0 At4g05070 unknown protein C.G. S.X.
0.03 3e-3 42 Hordeum vulgare Contig5242_at Contig5242 - - 3e-1 At2g30560 glycine-rich protein C.G. S.X.
0.03 6e-5 50 Oryza sativa OsAffx.16101.1.A1_at - - - 0 C.G. S.X.
0.20 6e-4 46 Populus trichocarpa PtpAffx.1257.3.A1_at CA934446 hypothetical protein - 4e-4 At1g62500 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 7e-3 42 Triticum aestivum TaAffx.51609.1.S1_at CA722993 - - 5e-2 At5g56840 DNA-binding family protein C.G. S.X.
0.15 4e-8 57 Vitis vinifera 1619662_at CF404114 hypothetical protein LOC100262648 - 1e+0 At3g21360 electron carrier/ oxidoreductase C.G. S.X.
0.02 1e-2 40 Zea mays Zm.10389.1.A1_at AY095207.1 glycine-rich protein GRP5 - 4e-1 At5g17650 glycine/proline-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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