CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g62480

Gene name vacuolar calcium-binding protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g62480 842545 vacuolar calcium-binding protein-related F:unknown;P:response to cadmium ion, response to salt stress;C:cellular_component unknown;OMBFPVA S.X. H.G.
0.30 32.1 At1g55810 842031 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV S.X. H.G.
0.25 22.6 At5g14240 831274 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB S.X. H.G.
0.24 20.7 At3g55770 824743 LIM domain-containing protein F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPF S.X. H.G.
0.24 20.7 At2g14170 815903 ALDH6B2 Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase S.X. H.G.
0.23 19.3 At5g18110 831929 NCBP (NOVEL CAP-BINDING PROTEIN) F:RNA binding, translation initiation factor activity;P:translational initiation;C:cytoplasm;MOFP S.X. H.G.
0.21 15.8 At3g60600 825231 VAP (VESICLE ASSOCIATED PROTEIN) Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. S.X. H.G.
0.18 11.4 At5g28050 832875 cytidine/deoxycytidylate deaminase family protein F:hydrolase activity, zinc ion binding, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine deoxyribonucleoside interconversion, deoxyribose phosphate metabolic process, anaerobic respiration;C:cellular_component unknown;BOFMPA S.X. H.G.
0.18 11.4 At1g49240 841347 ACT8 (ACTIN 8) Member of a subclass of actins composed of ACT2 and ACT8. Its mRNA is strongly expressed in strongly expressed in leaves, roots, stems, flowers, pollen, and siliques. However, protein expression, assayed by a ACT8:GUS fusion reporter, is very low in pollen. S.X. H.G.
0.17 10.2 At3g01520 821122 universal stress protein (USP) family protein F:molecular_function unknown;P:N-terminal protein myristoylation, response to stress;C:plasma membrane;BPAMOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
166.6 100.0 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
125.3 99.9 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
66.3 99.8 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
46.2 99.8 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
40.7 99.8 GSM158703 WT-ESTRADIOL-REP1 GSE6954 Identification of AGL24 downstream genes by using XVE inducible system
38.6 99.8 GSM226548 Slice6JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
37.5 99.7 GSM158704 HY213-MOCK-REP2 GSE6954 Identification of AGL24 downstream genes by using XVE inducible system
35.1 99.7 GSM158702 HY213-ESTRADIOL-REP1 GSE6954 Identification of AGL24 downstream genes by using XVE inducible system
31.2 99.7 GSM158706 WT-ESTRADIOL-REP2 GSE6954 Identification of AGL24 downstream genes by using XVE inducible system
30.6 99.7 E-MEXP-1112-raw-cel-1590665689
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.19 2e-7 56 At1g12080 837760 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.10 6e-5 48 At3g59370 825106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.01 1e-2 40 At1g04470 839512 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.03 1e-2 40 At1g49560 841380 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO C.G. S.X.
0.03 6e-2 38 At4g39190 830074 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA C.G. S.X.
0.03 2e-1 36 At5g40530 834051 - F:unknown;P:unknown;C:unknown;MOFP C.G. S.X.
0.01 2e-1 36 At3g18090 821334 NRPD2b Encodes a subunit of RNA polymerase IV (aka RNA polymerase D). NRPD2b is closely related to NRPD2a, but has lower levels of transcription and does not affect endogenous siRNA when mutated. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e+0 32 Glycine max PsAffx.psZO003iB04r_at PsAffx.psZO003iB04r - - 4e+0 At1g62480 vacuolar calcium-binding protein-related C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig1879_at Contig1879 - - 4e-38 At1g22840 CYTC-1 (CYTOCHROME C-1) C.G. S.X.
0.03 2e+0 34 Oryza sativa OsAffx.5314.1.A1_at - - - 0 C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.204120.1.S1_at pmrna8127 hypothetical protein - 5e-3 At1g80610 unknown protein C.G. S.X.
0.04 9e-1 34 Triticum aestivum TaAffx.109706.1.S1_at CA670185 - - 9e-1 At1g62480 vacuolar calcium-binding protein-related C.G. S.X.
0.05 3e-1 34 Vitis vinifera 1615526_at CB001958 - - 3e-2 At1g62480 vacuolar calcium-binding protein-related C.G. S.X.
0.03 2e+0 32 Zea mays Zm.15916.1.S1_at CF244293 - - 1e+0 At1g62480 vacuolar calcium-binding protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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