CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g62450

Gene name Rho GDP-dissociation inhibitor family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At1g62450 842543 Rho GDP-dissociation inhibitor family protein F:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPO S.X. H.G.
0.74 86.1 At2g19330 816450 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:chloroplast;MPBOFAV S.X. H.G.
0.72 84.8 At5g61700 836292 ATATH16 member of ATH subfamily S.X. H.G.
0.70 83.5 At5g17480 831614 APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1) F:calcium ion binding;P:biological_process unknown;C:cytoplasm;MPFOB S.X. H.G.
0.69 82.9 At1g63060 842609 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
0.68 82.2 At1g26480 839189 GRF12 (GENERAL REGULATORY FACTOR 12) 14-3-3 protein GF14iota (grf12) S.X. H.G.
0.67 81.6 At2g13570 815843 NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MOPF S.X. H.G.
0.67 81.6 At4g29340 829055 PRF4 (PROFILIN 4) Profilin is a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton in eukaryotes, including higher plants. PRF4 and PRF5 are late pollen-specific and are not detectable in other cell types of the plant body including microspores and root hairs. Immunocytochemical studies at the subcellular level reveal that both the constitutive and pollen-specific profilins are abundant in the cytoplasm. In vegetative cell types, such as root apical cells, profilins showed localization to nuclei in addition to the cytoplasmic staining. S.X. H.G.
0.67 81.6 At5g09550 830814 RAB GDP-dissociation inhibitor F:RAB GDP-dissociation inhibitor activity;P:regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPB S.X. H.G.
0.63 78.1 At3g46750 823828 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
507.9 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
315.1 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
167.5 100.0 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
161.4 99.9 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
131.1 99.9 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
101.9 99.9 GSM106913 opr3_JA_8 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
101.1 99.9 GSM131593 ATGE_36_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
98.0 99.9 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
93.5 99.9 GSM131592 ATGE_36_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
92.2 99.9 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.39 2e-52 206 At1g12070 837759 Rho GDP-dissociation inhibitor family protein F:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPO C.G. S.X.
0.33 3e-20 99 At3g07880 819979 Rho GDP-dissociation inhibitor family protein F:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPO C.G. S.X.
0.02 1e-3 44 At2g45840 819192 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBOV C.G. S.X.
0.03 5e-3 42 At3g13780 820588 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.01 2e-2 40 At5g47690 834820 binding F:binding;P:biological_process unknown;C:mitochondrion, nucleus, chloroplast;MOFPBVA C.G. S.X.
0.01 2e-2 40 At3g49710 824133 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.01 2e-2 40 At1g75150 843852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 3e-11 69 Glycine max Gma.7146.1.A1_at BE659282 - - 2e-11 At1g62450 Rho GDP-dissociation inhibitor family protein C.G. S.X.
0.04 1e-5 50 Hordeum vulgare Contig13621_s_at Contig13621 - - 2e-4 At1g12070 Rho GDP-dissociation inhibitor family protein C.G. S.X.
0.09 3e-9 63 Oryza sativa Os06g0318300 AK060873.1 - Rho GDP-dissociation inhibitor 1 (Rho GDI-1)(AtRhoGDI1) 2e-7 At1g12070 Rho GDP-dissociation inhibitor family protein C.G. S.X.
0.20 9e-18 91 Populus trichocarpa PtpAffx.202465.1.S1_at pmrna4935 hypothetical protein - 3e-35 At3g07880 Rho GDP-dissociation inhibitor family protein C.G. S.X.
0.06 4e-4 46 Triticum aestivum Ta.19319.1.S1_x_at CA649723 - - 1e-4 At1g12070 Rho GDP-dissociation inhibitor family protein C.G. S.X.
0.08 4e-10 63 Vitis vinifera 1619196_at CB916796 - - 1e-15 At1g12070 Rho GDP-dissociation inhibitor family protein C.G. S.X.
0.10 6e-10 63 Zea mays Zm.4077.1.S1_x_at AY105154.1 - - 9e-7 At3g07880 Rho GDP-dissociation inhibitor family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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