CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g62440

Gene name LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g62440 842542 LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2) encodes a paralog of LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) which acts synergistically with LRX1 in root hair cell morphogenesis. S.X. H.G.
0.51 66.3 At1g35500 840443 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.49 63.5 At3g28470 822477 TDF1 (DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1) Member of the R2R3 factor gene family. S.X. H.G.
0.46 59.8 At5g32590 833234 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAV S.X. H.G.
0.46 59.8 At5g30470 3770969 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.44 57.2 At5g36150 833612 ATPEN3 (putative pentacyclic triterpene synthase 3) F:lupeol synthase activity, catalytic activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFM S.X. H.G.
0.42 53.9 At2g22350 816767 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.40 50.8 At5g28280 3770784 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.40 50.8 At3g31310 822878 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.38 46.7 At3g32060 3769238 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
440.5 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
376.2 100.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
347.5 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
331.1 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
309.8 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
230.1 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
217.4 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
206.6 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
176.2 100.0 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
170.5 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.44 5e-148 525 At1g12040 837756 LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) encodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort, swell, or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper. C.G. S.X.
0.06 2e-8 61 At3g24480 822038 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;PMOBFVA C.G. S.X.
0.05 9e-8 59 At1g49490 841373 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBPOFVA C.G. S.X.
0.03 1e-6 56 At4g18670 827601 protein binding / structural constituent of cell wall F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBPFOVA C.G. S.X.
0.03 3e-4 48 At3g19020 821435 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBOPFVA C.G. S.X.
0.03 1e-3 46 At5g25550 832630 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVA C.G. S.X.
0.10 1e-3 46 At4g13340 826964 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVA C.G. S.X.
0.01 2e-2 42 At3g50140 824176 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;MPOFVBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 40 Glycine max GmaAffx.91432.1.S1_x_at CF807157 - - 4e-3 At1g76930 ATEXT4 (EXTENSIN 4) C.G. S.X.
0.02 2e-1 38 Hordeum vulgare Contig15910_at Contig15910 - - 3e-4 At1g02710 glycine-rich protein C.G. S.X.
0.02 1e-2 44 Oryza sativa Os07g0596300 AK120222.1 - Actin-binding FH2 domain containing protein 2e-8 At3g32400 formin homology 2 domain-containing protein / FH2 domain-containing protein C.G. S.X.
0.09 5e-4 48 Populus trichocarpa PtpAffx.217248.1.S1_at pmrna32435 hypothetical protein - 7e-13 At1g12040 LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) C.G. S.X.
0.03 2e-2 42 Triticum aestivum TaAffx.9779.1.S1_at CA730877 - - 2e-2 At5g61660 glycine-rich protein C.G. S.X.
0.02 4e-1 36 Vitis vinifera 1620940_at CF201899.1 - - 2e+1 At5g66990 RWP-RK domain-containing protein C.G. S.X.
0.02 2e+0 34 Zea mays Zm.9625.1.A1_x_at BM340508 Hypothetical protein LOC100216879 - 3e-1 At4g33660 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0000904 The change in form (cell shape and size) that occurs when relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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