CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g61930

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g61930 842488 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.13 5.8 At5g57840 835894 transferase family protein encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091) S.X. H.G.
0.13 5.8 At1g75390 843875 AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44) F:transcription factor activity, protein heterodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PFOM S.X. H.G.
0.09 2.8 At4g16447 827342 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.07 1.9 At3g05170 819681 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BFOPMA S.X. H.G.
0.04 0.9 At2g41220 818721 GLU2 (GLUTAMATE SYNTHASE 2) Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression is most abundant in root. S.X. H.G.
0.02 0.4 At5g40760 834076 G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6) Encodes a cytosolic glucose-6-phosphate dehydrogenase that is insensitive to reduction by DTT and whose mRNA is expressed ubiquitously. S.X. H.G.
0.02 0.4 At1g13830 837944 beta-1,3-glucanase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBMOFVA S.X. H.G.
0.01 0.2 At2g23700 816901 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF S.X. H.G.
0.01 0.2 At1g04120 839277 ATMRP5 member of MRP subfamily S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
109.2 99.9 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
82.8 99.9 GSM242961 Mock day 7 (day7E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
79.7 99.9 GSM242962 Mock day 7 (day7E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
78.7 99.9 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
78.3 99.9 GSM142755 MJ001_ATH1_A6-jones-RH-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
71.1 99.9 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
58.3 99.8 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
56.8 99.8 GSM47036 hen1 26 GSE2473 Small RNA biogenesis mutants
55.8 99.8 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
51.9 99.8 GSM242963 Steroid day 7 (day7D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.35 2e-24 113 At1g11700 837714 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO C.G. S.X.
0.03 8e-2 38 At4g11930 826800 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.02 8e-2 38 At4g36980 829852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVB C.G. S.X.
0.01 8e-2 38 At3g24880 822086 DNA binding F:DNA binding;P:unknown;C:unknown;MOFPBVA C.G. S.X.
0.01 8e-2 38 At3g06290 819803 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB C.G. S.X.
0.01 8e-2 38 At3g24870 822085 DNA binding F:DNA binding;P:unknown;C:apoplast;MOFPBVA C.G. S.X.
0.04 3e-1 36 At1g47970 841215 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA C.G. S.X.
0.02 1e+0 34 At4g35050 829657 MSI3 (MULTICOPY SUPPRESSOR OF IRA1 3) Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-9 63 Glycine max GmaAffx.83807.1.S1_at BQ473162 - - 4e-14 At1g11700 unknown protein C.G. S.X.
0.06 2e-3 42 Hordeum vulgare HV08J06u_at HV08J06u - - 1e+0 At5g67490 unknown protein C.G. S.X.
0.03 1e-1 38 Oryza sativa Os01g0746000 9629.m05287 - - 7e-2 At1g61930 unknown protein C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.224.1.S1_s_at CV278793 hypothetical protein - 5e-10 At1g11700 unknown protein C.G. S.X.
0.04 8e-2 38 Triticum aestivum TaAffx.56717.1.S1_x_at CA645855 - - 8e-1 At3g17160 unknown protein C.G. S.X.
0.04 9e-5 46 Vitis vinifera 1615806_at BQ800314 hypothetical protein LOC100246942 - 6e-4 At1g61930 unknown protein C.G. S.X.
0.04 2e+0 32 Zea mays Zm.9942.1.A1_at CK368883 hypothetical protein LOC100274544 - 8e-2 At5g63740 zinc finger protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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