Gene omics information

Query gene ID At1g61290
Gene name SYP124 (SYNTAXIN OF PLANTS 124)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9597.0At1g61290842423SYP124 (SYNTAXIN OF PLANTS 124)member of SYP12 Gene FamilyS.X.H.G.
0.8391.4At3g09530820110ATEXO70H3 (exocyst subunit EXO70 family protein H3)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
0.8391.4At1g18990838480unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOPFBVAS.X.H.G.
0.8391.4At3g20190821563leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;PMOFBVAS.X.H.G.
0.8391.4At3g18220821350phosphatidic acid phosphatase family protein / PAP2 family proteinF:catalytic activity, phosphatidate phosphatase activity;P:biological_process unknown;C:membrane;MFOBPAVS.X.H.G.
0.8290.9At5g23270832391STP11 (SUGAR TRANSPORTER 11)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAS.X.H.G.
0.8290.9At1g68110843139epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;PMFOS.X.H.G.
0.8290.9At2g18470816362protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVAS.X.H.G.
0.8290.9At3g56600824827inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptorF:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:biological_process unknown;C:unknown;PMOFBS.X.H.G.
0.8190.4At4g27790828892calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOBS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
291.5100.0GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
253.5100.0GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
204.8100.0E-MEXP-285-raw-cel-440782725
186.0100.0E-MEXP-285-raw-cel-440782791
180.2100.0E-MEXP-1138-raw-cel-1432772682
174.3100.0E-ATMX-35-raw-cel-1574334880
157.199.9GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
154.399.9E-MEXP-1138-raw-cel-1432772938
134.599.9GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
133.399.9E-MEXP-1138-raw-cel-1432773226
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.772e-136486At1g11250837666SYP125 (SYNTAXIN OF PLANTS 125)member of SYP12 Gene FamilyC.G.S.X.
0.083e-1169At4g03330827970SYP123 (SYNTAXIN OF PLANTS 123)member of SYP12 Gene FamilyC.G.S.X.
0.118e-961At3g11820820355SYP121 (SYNTAXIN OF PLANTS 121)Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.C.G.S.X.
0.023e-240At5g45310834567unknown proteinF:unknown;P:unknown;C:endomembrane system;OMVBFPAC.G.S.X.
0.024e-136Atmg00290--encodes a mitochondrial ribosomal protein S4, a constituent of the small subunit of the ribosomal complexC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.243e-1583Glycine maxGmaAffx.23225.1.A1_atBU550619--1e-15At1g61290SYP124 (SYNTAXIN OF PLANTS 124)C.G.S.X.
0.033e+032Hordeum vulgareHM08L19r_atHM08L19r--3e-2At3g09980unknown proteinC.G.S.X.
0.034e+034Oryza sativaOsAffx.25421.1.S1_at---0C.G.S.X.
0.292e-1997Populus trichocarpaPtpAffx.209719.1.S1_atpmrna19184hypothetical protein-2e-28At1g11250SYP125 (SYNTAXIN OF PLANTS 125)C.G.S.X.
0.037e+032Triticum aestivumTaAffx.10868.1.A1_atBJ230548MIKC-type MADS-box transcription factor WM24B-4e+0At2g01200IAA32 (INDOLE-3-ACETIC ACID INDUCIBLE 32)C.G.S.X.
0.025e-134Vitis vinifera1613047_atCF372064hypothetical protein LOC100249106-4e-84At2g19790clathrin adaptor complex small chain family proteinC.G.S.X.
0.033e+032Zea maysZmAffx.73.1.S1_atAI665183Hypothetical protein LOC100191932-1e-5At1g11930alanine racemase family proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
SGO:0006944The joining of two lipid bilayers to form a single membrane.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
04130Link to KEGG PATHWAYSNARE interactions in vesicular transport
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage