CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g60590

Gene name polygalacturonase, putative / pectinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g60590 842353 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA S.X. H.G.
0.47 61.2 At5g02830 831772 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA S.X. H.G.
0.41 52.4 At4g28080 828923 binding F:binding;P:unknown;C:unknown;MBFOPAV S.X. H.G.
0.39 48.4 At2g32640 817824 unknown protein F:unknown;P:unknown;C:chloroplast;BPO S.X. H.G.
0.38 46.7 At3g02830 821230 ZFN1 (ZINC FINGER PROTEIN 1) Encodes a zinc finger protein. S.X. H.G.
0.36 43.6 At3g03770 821164 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.34 39.8 At1g23205 838929 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.30 32.1 At5g21100 832234 L-ascorbate oxidase, putative F:oxidoreductase activity, copper ion binding, L-ascorbate oxidase activity;P:oxidation reduction;C:plant-type cell wall;BFPMOA S.X. H.G.
0.29 30.3 At1g15290 838097 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV S.X. H.G.
0.29 30.3 At5g20220 832144 zinc knuckle (CCHC-type) family protein F:unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:unknown;VMFOPB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
74.5 99.9 E-MEXP-265-raw-cel-414617783
47.8 99.8 E-MEXP-265-raw-cel-414617890
44.0 99.8 GSM142661 MB002_ATH1_A1-Eland-ch1 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
43.7 99.8 GSM142662 MB002_ATH1_A2-Eland-ch2 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
36.7 99.7 E-MEXP-265-raw-cel-414617695
34.2 99.7 E-MEXP-1344-raw-cel-1559561683
33.7 99.7 GSM318331 EL_14DAS_2 GSE12676 Arabidopsis thaliana Ler developmental series
33.4 99.7 GSM318330 EL_14DAS_1 GSE12676 Arabidopsis thaliana Ler developmental series
32.2 99.7 E-MEXP-557-raw-cel-879731511
28.8 99.7 E-MEXP-1299-raw-cel-1519902558
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.51 1e-76 287 At1g10640 837607 polygalacturonase F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA C.G. S.X.
0.03 5e-5 50 At2g43880 818992 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV C.G. S.X.
0.03 8e-4 46 At5g14650 831317 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.06 3e-3 44 At1g70500 843386 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.03 1e-2 42 At3g26610 822270 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV C.G. S.X.
0.01 5e-2 40 At3g07970 819988 QRT2 (QUARTET 2) Required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation. C.G. S.X.
0.03 5e-2 40 At2g41850 818785 PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA) ADPG2. C.G. S.X.
0.02 5e-2 40 At1g23460 838954 polygalacturonase F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 4e-19 97 Glycine max Gma.13475.1.S1_at CD398711 polygalacturonase precursor - 1e-19 At1g60590 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.02 2e+0 34 Hordeum vulgare HY08A19u_at HY08A19u - - 1e+0 At1g60590 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.05 3e-8 61 Oryza sativa Os.8509.1.S1_at - - - 0 C.G. S.X.
0.17 1e-6 56 Populus trichocarpa PtpAffx.24997.1.S1_at CV238120 hypothetical protein - 4e-7 At1g60590 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.03 6e-5 50 Triticum aestivum TaAffx.30977.1.S1_at CA620607 - - 2e-5 At1g60590 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.04 3e-10 65 Vitis vinifera 1617208_at AF159125.1 polygalacturonase - 8e-9 At5g14650 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.05 1e-3 44 Zea mays Zm.6626.1.A1_at AI491257 - - 1e-3 At1g60590 polygalacturonase, putative / pectinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00412 Glycoside Hydrolase
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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