CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g60500

Gene name dynamin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g60500 842345 dynamin family protein F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.56 73.0 At3g53060 824472 ASK6 (ARABIDOPSIS SKP1-LIKE 6) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPFOV S.X. H.G.
0.55 70.6 At3g24330 822022 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFBO S.X. H.G.
0.55 70.6 At2g35970 818170 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.53 68.6 At1g35900 840492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.53 68.6 At2g34580 818022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAV S.X. H.G.
0.53 68.6 At3g44140 823535 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.52 67.4 At1g60280 842323 ANAC023 (Arabidopsis NAC domain containing protein 23) F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P S.X. H.G.
0.52 67.4 At3g22340 3768898 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.52 67.4 At4g23580 828458 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
519.5 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
507.1 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
376.0 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
360.7 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
319.4 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
290.2 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
289.2 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
278.6 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
267.4 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
261.4 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.49 0 850 At1g60530 842348 dynamin family protein F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.01 6e-2 40 At4g24710 828573 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAV C.G. S.X.
0.01 3e-1 38 At2g23140 816846 binding / ubiquitin-protein ligase F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;OPMFBVA C.G. S.X.
0.01 3e-1 38 At1g76680 844001 OPR1 Encodes a a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases. One of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. C.G. S.X.
0.01 1e+0 36 At5g65440 836669 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;PO C.G. S.X.
0.01 1e+0 36 At2g28320 817379 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein F:phosphoinositide binding;P:signal transduction;C:plasma membrane;PMO C.G. S.X.
0.01 4e+0 34 At5g23740 832439 RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) Encodes a putative ribosomal protein S11 (RPS11-beta). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e+0 34 Glycine max PsAffx.C50000002_at PsAffx.C50000002 - - 9e-1 At1g80840 WRKY40 C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig16107_at Contig16107 - - 2e+0 At3g09980 unknown protein C.G. S.X.
0.01 5e-1 38 Oryza sativa Os.48069.1.S1_at - - - 0 C.G. S.X.
0.13 1e-7 59 Populus trichocarpa PtpAffx.218944.1.S1_s_at pmrna34708 hypothetical protein - 3e-8 At1g60500 dynamin family protein C.G. S.X.
0.02 4e+0 34 Triticum aestivum Ta.9715.2.S1_at BJ314240 - - 8e-8 At1g32850 UBP11 (UBIQUITIN-SPECIFIC PROTEASE 11) C.G. S.X.
0.01 2e-2 40 Vitis vinifera 1618877_at CF213678 hypothetical protein LOC100252486 - 2e-24 At5g11490 adaptin family protein C.G. S.X.
0.01 4e-1 36 Zea mays ZmAffx.901.1.A1_at AI770894 - - 1e+1 At5g47455 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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