CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g60090

Gene name BGLU4 (BETA GLUCOSIDASE 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.42 53.9 At1g60090 842304 BGLU4 (BETA GLUCOSIDASE 4) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA S.X. H.G.
0.77 88.0 At1g48660 841288 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF S.X. H.G.
0.71 84.2 At2g40220 818614 ABI4 (ABA INSENSITIVE 4) encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings. S.X. H.G.
0.71 84.2 At1g33790 840271 jacalin lectin family protein F:unknown;P:biological_process unknown;C:chloroplast;PO S.X. H.G.
0.57 73.8 At5g14450 831296 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM S.X. H.G.
0.56 73.0 At3g05190 819683 aminotransferase class IV family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFM S.X. H.G.
0.44 57.2 At5g03860 831690 MLS (MALATE SYNTHASE) Encodes a protein with malate synthase activity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
219.9 100.0 GSM134300 Penfield_1-2_endosperm-control_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
205.8 100.0 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
199.0 100.0 GSM133306 RIKEN-NAKABAYASHI2B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
188.1 100.0 GSM133309 RIKEN-NAKABAYASHI4B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
170.6 100.0 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
157.4 99.9 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
150.6 99.9 GSM134299 Penfield_1-1_endosperm-control_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
143.9 99.9 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
138.1 99.9 GSM133305 RIKEN-NAKABAYASHI2A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
107.0 99.9 GSM134306 Penfield_1-8_endosperm-PAC_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 0 714 At4g22100 828299 BGLU3 (BETA GLUCOSIDASE 2) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA C.G. S.X.
0.32 2e-60 234 At3g62740 825449 BGLU7 (BETA GLUCOSIDASE 7) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA C.G. S.X.
0.38 6e-57 222 At3g62750 825450 BGLU8 (BETA GLUCOSIDASE 8) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:vacuole;BOPMFA C.G. S.X.
0.40 4e-55 216 At4g27830 828896 BGLU10 (BETA GLUCOSIDASE 10) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:vacuole;BOPMFA C.G. S.X.
0.54 3e-49 196 At5g16580 831520 BGLU2 (BETA GLUCOSIDASE 2) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPMOFA C.G. S.X.
0.40 3e-37 157 At4g27820 828895 BGLU9 (BETA GLUCOSIDASE 9) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:peroxisome;BOPMFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 4e-3 44 Glycine max GmaAffx.10749.1.S1_at BU926932 - - 2e-23 At1g02850 BGLU11 (BETA GLUCOSIDASE 11) C.G. S.X.
0.04 6e+0 32 Hordeum vulgare Contig2737_at Contig2737 - - 9e-1 At4g22100 BGLU3 (BETA GLUCOSIDASE 2) C.G. S.X.
0.07 2e-9 65 Oryza sativa Os01g0930800 AK070499.1 - Glycoside hydrolase, family 1 protein 1e-9 At1g60090 BGLU4 (BETA GLUCOSIDASE 4) C.G. S.X.
0.05 4e-3 44 Populus trichocarpa PtpAffx.139109.1.S1_s_at CX168297 hypothetical protein - 5e-3 At3g03640 BGLU25 (BETA GLUCOSIDASE 25) C.G. S.X.
0.07 1e-5 52 Triticum aestivum Ta.1027.1.A1_a_at BG908387 - - 3e-6 At1g60090 BGLU4 (BETA GLUCOSIDASE 4) C.G. S.X.
0.02 6e-2 38 Vitis vinifera 1617425_at BQ799379 hypothetical protein LOC100242172 - 2e-12 At5g21920 YGGT family protein C.G. S.X.
0.02 5e+0 32 Zea mays Zm.7512.2.A1_a_at AI691598 hypothetical protein LOC100276101 - 4e-1 At5g08590 SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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