CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g60030

Gene name xanthine/uracil permease family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.85 92.4 At1g60030 842297 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV S.X. H.G.
0.85 92.4 At1g13920 837952 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.85 92.4 At1g65910 842903 anac028 (Arabidopsis NAC domain containing protein 28) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM S.X. H.G.
0.85 92.4 At2g39830 818570 DAR2 (DA1-RELATED PROTEIN 2) F:zinc ion binding;P:unknown;C:chloroplast;MOPFB S.X. H.G.
0.85 92.4 At2g15310 816020 ATARFB1A (ADP-ribosylation factor B1A) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins. S.X. H.G.
0.85 92.4 At2g41300 818729 strictosidine synthase F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOA S.X. H.G.
0.84 91.9 At5g37180 833692 SUS5 Encodes a protein with sucrose synthase activity (SUS5). S.X. H.G.
0.84 91.9 At1g29520 839829 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P S.X. H.G.
0.84 91.9 At4g24250 828526 MLO13 (MILDEW RESISTANCE LOCUS O 13) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). S.X. H.G.
0.83 91.4 At5g18970 832015 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
422.3 100.0 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
345.2 100.0 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
332.8 100.0 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
329.9 100.0 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
228.8 100.0 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
208.0 100.0 GSM134206 Murray_3-3_D5-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
198.5 100.0 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
191.2 100.0 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
132.5 99.9 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
123.6 99.9 GSM133953 Murray_2-9_T16-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.74 3e-96 353 At1g10540 837595 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV C.G. S.X.
0.29 2e-16 87 At5g62890 836409 permease, putative F:transmembrane transporter activity;P:transport;C:cell wall, vacuole, membrane;BOMPFAV C.G. S.X.
0.23 2e-16 87 At5g49990 835063 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV C.G. S.X.
0.01 8e-4 46 At5g02480 831883 - F:unknown;P:unknown;C:cellular_component unknown;P C.G. S.X.
0.01 8e-4 46 At1g72790 843610 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MPFOBVA C.G. S.X.
0.01 8e-4 46 At1g59910 842285 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MBOFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 1e-25 119 Glycine max GmaAffx.7387.1.S1_at BQ629059 - - 1e-16 At1g60030 xanthine/uracil permease family protein C.G. S.X.
0.13 2e-12 73 Hordeum vulgare Contig5847_at Contig5847 - - 3e-13 At5g62890 permease, putative C.G. S.X.
0.20 6e-28 127 Oryza sativa Os08g0420600 AK073563.1 - Permease 1 1e-15 At5g62890 permease, putative C.G. S.X.
0.23 5e-15 83 Populus trichocarpa PtpAffx.159667.2.A1_a_at CK095854 nucleobase ascorbate transporter - 1e-15 At1g60030 xanthine/uracil permease family protein C.G. S.X.
0.14 4e-21 103 Triticum aestivum Ta.6422.1.S1_at CA654103 - - 4e-19 At5g62890 permease, putative C.G. S.X.
0.39 2e-20 99 Vitis vinifera 1611507_at CD798819 hypothetical protein LOC100244964 - 6e-45 At5g62890 permease, putative C.G. S.X.
0.22 2e-21 103 Zea mays Zm.6743.2.S1_at AY104873.1 permease I - 2e-23 At5g62890 permease, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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