Gene omics information

Query gene ID At1g59870
Gene name PEN3 (PENETRATION 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5570.6At1g59870842281PEN3 (PENETRATION 3)ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acid–dependent manner. Required for mlo resistance. Has Cd transporter activity (Cd2+ extrusion pump) and contributes to heavy metal resistance.S.X.H.G.
0.6781.6At4g38550830012-F:unknown;P:unknown;C:chloroplast;MFPOBVAS.X.H.G.
0.5065.3At3g50950824259disease resistance protein (CC-NBS-LRR class), putativeF:ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBFOVAS.X.H.G.
0.4761.2At3g19010821434oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:flavonol synthase activity, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFMS.X.H.G.
0.4457.2At2g44490819056PEN2 (PENETRATION 2)Encodes a glycosyl hydrolase that localizes to peroxisomes and acts as a component of an inducible preinvasion resistance mechanism. Required for mlo resistance.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
10.799.2E-MEXP-807-raw-cel-1173273144
9.399.1E-ATMX-6-raw-cel-1308219150
9.399.1GSM128664Underwood_1-18_Cor-hrpS-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
8.799.0E-MEXP-173-raw-cel-357965520
8.699.0E-MEXP-807-raw-cel-1173273252
8.599.0E-MEXP-1443-raw-cel-1581869632
8.499.0GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
8.399.0E-MEXP-807-raw-cel-1173272948
8.299.0GSM128685Underwood_1-38_E.coli-TUV86-2-fliC-10e8-7h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
8.198.9GSM142838MG001_ATH1_A17-Torres-6N3GSE6176Impact of Type III effectors on plant defense responses
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.6901144At1g15210838087PDR7 (PLEIOTROPIC DRUG RESISTANCE 7)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane, chloroplast, membrane;BOMFAPVC.G.S.X.
0.316e-44180At3g16340820881PDR1F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMFAPVC.G.S.X.
0.111e-32143At1g15520838122PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots.C.G.S.X.
0.061e-20103At3g30842822863PDR10 (PLEIOTROPIC DRUG RESISTANCE 10)F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:multidrug transport;C:membrane;BOMFAPVC.G.S.X.
0.063e-1585At2g29940817544PDR3 (PLEIOTROPIC DRUG RESISTANCE 3)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPVC.G.S.X.
0.066e-1377At4g15236827189ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:membrane;BOMAFPVC.G.S.X.
0.091e-1173At3g53480824516PDR9 (PLEIOTROPIC DRUG RESISTANCE 9)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPVC.G.S.X.
0.056e-1067At4g15233827188ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:membrane;BOMFAPVC.G.S.X.
0.056e-1067At4g15230827187PDR2 (PLEIOTROPIC DRUG RESISTANCE 2)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.101e-24117Glycine maxGma.17345.1.S1_atBM732305--2e-25At1g59870PEN3 (PENETRATION 3)C.G.S.X.
0.085e-1273Hordeum vulgareContig10182_atContig10182--3e-16At1g15520PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)C.G.S.X.
0.179e-26121Oryza sativaOs06g0554800AK121182.1-ABC transporter (PDR5-like) isolog (PDR1 ABCtransporter)8e-34At3g16340PDR1C.G.S.X.
0.294e-52208Populus trichocarpaPtpAffx.202964.1.S1_atpmrna5868hypothetical protein-3e-52At1g59870PEN3 (PENETRATION 3)C.G.S.X.
0.072e-22109Triticum aestivumTa.9385.3.S1_atBJ316701--2e-26At1g15520PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)C.G.S.X.
0.023e-344Vitis vinifera1613840_atBQ800291ABC transporter-like-6e-7At1g15520PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)C.G.S.X.
0.035e-1583Zea maysZm.16899.1.A1_atBM332843--2e-15At3g16340PDR1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0042344The chemical reactions and pathways resulting in the breakdown of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan.
XGO:0042742Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
XGO:0052544Any process by which callose is transported to, and/or maintained in, the cell wall during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls.
XGO:0031348Any process that stops, prevents or reduces the frequency, rate or extent of a defense response.
XGO:0015691The directed movement of cadmium (Cd) ions into, out of, within or between cells.
XGO:0009627The salicylic acid mediated response to a pathogen which confers broad spectrum resistance.
XGO:0009817A response of an organism to a fungus that prevents the occurrence or spread of disease.
CGO:0006855The directed movement of drugs across a membrane into, out of, within or between cells.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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