CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g59870

Gene name PEN3 (PENETRATION 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.55 70.6 At1g59870 842281 PEN3 (PENETRATION 3) ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acid–dependent manner. Required for mlo resistance. Has Cd transporter activity (Cd2+ extrusion pump) and contributes to heavy metal resistance. S.X. H.G.
0.67 81.6 At4g38550 830012 - F:unknown;P:unknown;C:chloroplast;MFPOBVA S.X. H.G.
0.50 65.3 At3g50950 824259 disease resistance protein (CC-NBS-LRR class), putative F:ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBFOVA S.X. H.G.
0.47 61.2 At3g19010 821434 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:flavonol synthase activity, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM S.X. H.G.
0.44 57.2 At2g44490 819056 PEN2 (PENETRATION 2) Encodes a glycosyl hydrolase that localizes to peroxisomes and acts as a component of an inducible preinvasion resistance mechanism. Required for mlo resistance. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.7 99.2 E-MEXP-807-raw-cel-1173273144
9.3 99.1 E-ATMX-6-raw-cel-1308219150
9.3 99.1 GSM128664 Underwood_1-18_Cor-hrpS-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
8.7 99.0 E-MEXP-173-raw-cel-357965520
8.6 99.0 E-MEXP-807-raw-cel-1173273252
8.5 99.0 E-MEXP-1443-raw-cel-1581869632
8.4 99.0 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
8.3 99.0 E-MEXP-807-raw-cel-1173272948
8.2 99.0 GSM128685 Underwood_1-38_E.coli-TUV86-2-fliC-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
8.1 98.9 GSM142838 MG001_ATH1_A17-Torres-6N3 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 0 1144 At1g15210 838087 PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane, chloroplast, membrane;BOMFAPV C.G. S.X.
0.31 6e-44 180 At3g16340 820881 PDR1 F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMFAPV C.G. S.X.
0.11 1e-32 143 At1g15520 838122 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots. C.G. S.X.
0.06 1e-20 103 At3g30842 822863 PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:multidrug transport;C:membrane;BOMFAPV C.G. S.X.
0.06 3e-15 85 At2g29940 817544 PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPV C.G. S.X.
0.06 6e-13 77 At4g15236 827189 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:membrane;BOMAFPV C.G. S.X.
0.09 1e-11 73 At3g53480 824516 PDR9 (PLEIOTROPIC DRUG RESISTANCE 9) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV C.G. S.X.
0.05 6e-10 67 At4g15233 827188 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:membrane;BOMFAPV C.G. S.X.
0.05 6e-10 67 At4g15230 827187 PDR2 (PLEIOTROPIC DRUG RESISTANCE 2) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-24 117 Glycine max Gma.17345.1.S1_at BM732305 - - 2e-25 At1g59870 PEN3 (PENETRATION 3) C.G. S.X.
0.08 5e-12 73 Hordeum vulgare Contig10182_at Contig10182 - - 3e-16 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.17 9e-26 121 Oryza sativa Os06g0554800 AK121182.1 - ABC transporter (PDR5-like) isolog (PDR1 ABCtransporter) 8e-34 At3g16340 PDR1 C.G. S.X.
0.29 4e-52 208 Populus trichocarpa PtpAffx.202964.1.S1_at pmrna5868 hypothetical protein - 3e-52 At1g59870 PEN3 (PENETRATION 3) C.G. S.X.
0.07 2e-22 109 Triticum aestivum Ta.9385.3.S1_at BJ316701 - - 2e-26 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.02 3e-3 44 Vitis vinifera 1613840_at BQ800291 ABC transporter-like - 6e-7 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.03 5e-15 83 Zea mays Zm.16899.1.A1_at BM332843 - - 2e-15 At3g16340 PDR1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0042344 The chemical reactions and pathways resulting in the breakdown of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan.
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
X GO:0052544 Any process by which callose is transported to, and/or maintained in, the cell wall during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls.
X GO:0031348 Any process that stops, prevents or reduces the frequency, rate or extent of a defense response.
X GO:0015691 The directed movement of cadmium (Cd) ions into, out of, within or between cells.
X GO:0009627 The salicylic acid mediated response to a pathogen which confers broad spectrum resistance.
X GO:0009817 A response of an organism to a fungus that prevents the occurrence or spread of disease.
C GO:0006855 The directed movement of drugs across a membrane into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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