CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g59535

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g59535 842244 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.97 97.6 At1g23610 838971 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.93 96.4 At5g12450 831120 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.90 95.1 At1g67270 843047 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB S.X. H.G.
0.90 95.1 At2g25990 817140 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.90 95.1 At2g37610 818338 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.88 94.0 At2g01310 814659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.88 94.0 At5g17950 831662 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.87 93.5 At2g05500 815099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At1g65170 842824 ubiquitin carboxyl-terminal hydrolase family protein F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PMO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
460.0 100.0 E-MEXP-509-raw-cel-829148561
242.6 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
234.9 100.0 E-MEXP-509-raw-cel-829148525
224.4 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
217.9 100.0 E-MEXP-509-raw-cel-829148348
208.1 100.0 E-MEXP-509-raw-cel-829148597
178.0 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
171.6 100.0 E-MEXP-509-raw-cel-829148420
167.4 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
162.4 99.9 E-MEXP-509-raw-cel-829148492
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 2e-1 34 At5g42990 834314 UBC18 (ubiquitin-conjugating enzyme 18) F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MFOPV C.G. S.X.
0.02 2e-1 34 At4g35540 829706 transcription regulator/ zinc ion binding F:transcription regulator activity, zinc ion binding;P:regulation of transcription, DNA-dependent, regulation of transcription, transcription initiation;C:transcription factor complex;AFOMP C.G. S.X.
0.03 2e-1 34 At3g23210 821899 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBA C.G. S.X.
0.06 2e-1 34 At1g45050 841072 ATUBC2-1 member of ubiquitin-conjugating E2-proteins C.G. S.X.
0.04 8e-1 32 At3g56180 824784 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.05 8e-1 32 At3g14480 820671 glycine/proline-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA C.G. S.X.
0.03 8e-1 32 At2g36650 818237 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAV C.G. S.X.
0.03 3e+0 30 At5g18780 831996 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.04 3e+0 30 At5g66410 836773 PLP3b (Phosducin-like protein 3 homolog) Encodes a protein that functions in microtubule assembly. Plants with reduced levels of both PLP3a (At3g50960) and PLP3b show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 5e+0 30 Glycine max GmaAffx.83027.1.S1_at BQ081061 - - 2e-1 At1g75200 flavodoxin family protein / radical SAM domain-containing protein C.G. S.X.
0.06 6e+0 28 Hordeum vulgare HVSMEf0017C20f2_s_at HVSMEf0017C20f2 - - 3e+0 At3g55240 - C.G. S.X.
0.03 2e+0 32 Oryza sativa Os03g0704000 CR281175 - 30S ribosomal protein S13, chloroplast precursor(CS13) 1e-1 At5g14320 30S ribosomal protein S13, chloroplast (CS13) C.G. S.X.
0.07 1e+0 32 Populus trichocarpa PtpAffx.146569.1.A1_at CV271680 hypothetical protein - 3e+0 At4g26780 AR192 C.G. S.X.
0.05 3e+0 30 Triticum aestivum TaAffx.96.1.S1_at AJ613655 - - 9e-1 At5g55870 unknown protein C.G. S.X.
0.04 2e-2 36 Vitis vinifera 1619431_at CD715997 - - 3e-1 At1g59535 unknown protein C.G. S.X.
0.03 1e+0 30 Zea mays Zm.8749.1.A1_at BM335905 - - 6e-3 At5g35230 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage