CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g58420

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g58420 842211 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.72 84.8 At2g25735 817115 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.62 77.3 At1g72520 843584 lipoxygenase, putative F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFO S.X. H.G.
0.61 76.7 At5g27420 832801 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin, response to abscisic acid stimulus;C:endomembrane system;PMOFV S.X. H.G.
0.59 74.7 At5g67450 836881 AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor. S.X. H.G.
0.59 74.7 At4g23810 828481 WRKY53 member of WRKY Transcription Factor; Group III S.X. H.G.
0.57 73.8 At1g24140 839026 matrixin family protein F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVAF S.X. H.G.
0.56 73.0 At1g35210 840410 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO S.X. H.G.
0.56 73.0 At3g01830 820033 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB S.X. H.G.
0.54 69.5 At5g05300 830412 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
219.2 100.0 E-MEXP-807-raw-cel-1173273252
212.8 100.0 E-MEXP-807-raw-cel-1173273144
202.7 100.0 E-MEXP-807-raw-cel-1173273116
140.9 99.9 E-MEXP-807-raw-cel-1173273170
125.6 99.9 E-MEXP-807-raw-cel-1173273060
122.3 99.9 E-MEXP-807-raw-cel-1173273196
88.4 99.9 E-MEXP-807-raw-cel-1173273088
86.5 99.9 E-MEXP-807-raw-cel-1173273223
83.8 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
72.8 99.9 GSM48122 Col_8mer1 GSE2538 Chitin Oligomer Experiment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-6 54 At2g41900 818790 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MOPFBVA C.G. S.X.
0.25 1e-6 54 At1g10140 837551 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO C.G. S.X.
0.04 4e-6 52 At3g04590 819615 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOPFBV C.G. S.X.
0.03 2e-5 50 At4g17950 827520 DNA-binding family protein F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMFPBV C.G. S.X.
0.03 7e-5 48 At1g75340 843870 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:mitochondrion;OMFBPVA C.G. S.X.
0.02 7e-5 48 At1g43850 840981 SEU (seuss) Encodes a transcriptional co-regulator of AGAMOUS, that functions with LEUNIG to repress AG in the outer floral whorls. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 4e-4 46 Glycine max HgAffx.6386.1.S1_at CB825825 - - 6e-2 At2g22080 unknown protein C.G. S.X.
0.05 5e-4 44 Hordeum vulgare Contig26118_s_at Contig26118 - - 1e+0 At5g36280 - C.G. S.X.
0.04 2e-6 54 Oryza sativa Os01g0156000 AK106969.1 - CCA1 (MYB-related transcription factor (CCA1)supported by cDNA: gi:1777442) (MYB transcription factor) 4e-5 At1g01520 myb family transcription factor C.G. S.X.
0.06 4e-4 46 Populus trichocarpa PtpAffx.200136.1.S1_at pmrna249 hypothetical protein - 4e-2 At2g43030 ribosomal protein L3 family protein C.G. S.X.
0.05 2e-2 40 Triticum aestivum TaAffx.77901.1.S1_s_at CA740965 - - 3e-1 At1g17370 UBP1B (oligouridylate binding protein 1B) C.G. S.X.
0.05 3e-4 44 Vitis vinifera 1614311_at CF516097 hypothetical protein LOC100264243 - 2e-6 At1g15780 unknown protein C.G. S.X.
0.04 1e-1 36 Zea mays Zm.4615.2.A1_at AI714747 - - 2e-1 At1g58420 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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