Gene omics information

Query gene ID At1g58420
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g58420842211-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7284.8At2g25735817115unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.6277.3At1g72520843584lipoxygenase, putativeF:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFOS.X.H.G.
0.6176.7At5g27420832801zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin, response to abscisic acid stimulus;C:endomembrane system;PMOFVS.X.H.G.
0.5974.7At5g67450836881AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor.S.X.H.G.
0.5974.7At4g23810828481WRKY53member of WRKY Transcription Factor; Group IIIS.X.H.G.
0.5773.8At1g24140839026matrixin family proteinF:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVAFS.X.H.G.
0.5673.0At1g35210840410unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POS.X.H.G.
0.5673.0At3g01830820033calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBS.X.H.G.
0.5469.5At5g05300830412unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
83.899.9GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
72.899.9GSM48122Col_8mer1GSE2538Chitin Oligomer Experiment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-654At2g41900818790zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MOPFBVAC.G.S.X.
0.251e-654At1g10140837551-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POC.G.S.X.
0.044e-652At3g04590819615DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVC.G.S.X.
0.032e-550At4g17950827520DNA-binding family proteinF:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMFPBVC.G.S.X.
0.037e-548At1g75340843870zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:mitochondrion;OMFBPVAC.G.S.X.
0.027e-548At1g43850840981SEU (seuss)Encodes a transcriptional co-regulator of AGAMOUS, that functions with LEUNIG to repress AG in the outer floral whorls.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.074e-446Glycine maxHgAffx.6386.1.S1_atCB825825--6e-2At2g22080unknown proteinC.G.S.X.
0.055e-444Hordeum vulgareContig26118_s_atContig26118--1e+0At5g36280-C.G.S.X.
0.042e-654Oryza sativaOs01g0156000AK106969.1-CCA1 (MYB-related transcription factor (CCA1)supported by cDNA: gi:1777442) (MYB transcription factor)4e-5At1g01520myb family transcription factorC.G.S.X.
0.064e-446Populus trichocarpaPtpAffx.200136.1.S1_atpmrna249hypothetical protein-4e-2At2g43030ribosomal protein L3 family proteinC.G.S.X.
0.052e-240Triticum aestivumTaAffx.77901.1.S1_s_atCA740965--3e-1At1g17370UBP1B (oligouridylate binding protein 1B)C.G.S.X.
0.053e-444Vitis vinifera1614311_atCF516097hypothetical protein LOC100264243-2e-6At1g15780unknown proteinC.G.S.X.
0.041e-136Zea maysZm.4615.2.A1_atAI714747--2e-1At1g58420-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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