Gene omics information

Query gene ID At1g57870
Gene name ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At1g57870842162ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:response to salt stress, hyperosmotic response;C:cytosol;MOPFBVAS.X.H.G.
0.7586.9At1g20760838666calcium-binding EF hand family proteinF:calcium ion binding;P:unknown;C:plasma membrane;MBOFPVAS.X.H.G.
0.6781.6At1g67890843117protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOBFVAS.X.H.G.
0.6781.6At5g04920830374vacuolar protein sorting 36 family protein / VPS36 family proteinF:transporter activity;P:vesicle-mediated transport;C:ESCRT II complex;MFOPS.X.H.G.
0.3541.6At1g48050841223KU80Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
162.299.9GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
60.799.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
49.799.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.999.8GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
43.599.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
43.399.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.099.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.199.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
39.099.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.699.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8601227At1g09840837516ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MOPFBVAC.G.S.X.
0.184e-36153At5g14640831316SK13 (SHAGGY-LIKE KINASE 13)F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:response to salt stress, hyperosmotic response;C:cytosol;MPOFBVAC.G.S.X.
0.246e-29129At5g26751832733ATSK11encodes a SHAGGY-related kinase involved in meristem organization.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.481e-129464Glycine maxGma.4037.1.S1_atAW309605--2e-177At1g09840ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)C.G.S.X.
0.211e-46186Hordeum vulgareContig5449_atContig5449--2e-41At3g05840ATSK12C.G.S.X.
0.385e-74280Oryza sativaOs03g0841800AK070062.1-Shaggy-related protein kinase kappa (EC 2.7.1.-)(ASK-kappa) (AtK-1)4e-74At1g57870ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)C.G.S.X.
0.558e-137488Populus trichocarpaPtpAffx.17228.2.S1_a_atCV261896hypothetical protein-1e-160At1g09840ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)C.G.S.X.
0.213e-43176Triticum aestivumTa.13447.1.S1_atAF525086.1GSK-like kinase-2e-45At5g26751ATSK11C.G.S.X.
0.441e-107389Vitis vinifera1615576_atCB970198--1e-147At1g09840ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)C.G.S.X.
0.482e-51202Zea maysZmAffx.1.1.S1_atAY722707.1hypothetical LOC542518-5e-51At1g57870ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006972A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell.
XGO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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