Gene omics information

Query gene ID At1g56650
Gene name PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g56650842120PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1)Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene.S.X.H.G.
1.00100.0At1g034953766646transferase/ transferase, transferring acyl groups other than amino-acyl groupsF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PFS.X.H.G.
1.00100.0At3g29590822623AT5MATAt3g29590 (At5MAT) encodes a malonyl-CoA:anthocyanidin 5-O-glucoside-6"-O-malonyltransferase that is coordinately expressed with a epistatic 5-O-anthocyanidin glucosyltransferase (At4g14090). The enzyme is involved in the malonylation of anthocyanins in Arabidopsis.S.X.H.G.
1.00100.0At4g14090827046UDP-glucoronosyl/UDP-glucosyl transferase family proteinThe At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring.S.X.H.G.
0.9296.0At5g17220831586ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems.S.X.H.G.
0.9195.6At5g54060835489UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase)F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, response to sucrose stimulus;C:cellular_component unknown;PMBVFOS.X.H.G.
0.8391.4At4g22870828386leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putativeF:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
317.3100.0GSM339544Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -6GSE13469Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis
242.1100.0GSM339542Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -4GSE13469Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis
198.6100.0GSM339540Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -2GSE13469Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis
177.1100.0E-ATMX-32-raw-cel-1562974527
165.3100.0E-MEXP-449-raw-cel-676423253
140.699.9GSM339546Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -8GSE13469Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis
131.399.9GSM339548Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -10GSE13469Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis
125.499.9E-MEXP-449-raw-cel-676423218
107.499.9GSM269815T6 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
101.799.9E-ATMX-32-raw-cel-1562974409
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.852e-150531At1g66390842957MYB90 (MYB DOMAIN PROTEIN 90)production of anthocyanin pigment 2 protein (PAP2)C.G.S.X.
0.555e-130464At1g66380842956MYB114 (myb domain protein 114)Encodes a member of the MYB family of transcription factors. Involved in regulation of anthocyanin biosynthesis. Affects the expression of enzymes involved in later steps of anthocyanin biosynthesisC.G.S.X.
0.471e-87323At1g66370842955MYB113 (myb domain protein 113)Encodes a member of the MYB family of transcription factors. Involved in regulation of anthocyanin biosynthesis. Affects the expression of enzymes involved in later steps of anthocyanin biosynthesis.C.G.S.X.
0.042e-550At1g68320843161MYB62 (myb domain protein 62)putative transcription factor: R2R3-MYB transcription familyC.G.S.X.
0.111e-448At5g14750831327ATMYB66 (MYB DOMAIN PROTEIN 66)Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).C.G.S.X.
0.044e-446At1g74430843784MYB95 (myb domain protein 95)Encodes a putative transcription factor (MYB95).C.G.S.X.
0.042e-344At5g40330834031MYB23 (MYB DOMAIN PROTEIN 23)Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1.C.G.S.X.
0.082e-344At3g27920822415ATMYB0 (MYB DOMAIN PROTEIN 0)Encodes a Myb-like protein that is required for induction of trichome development.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.135e-446Glycine maxGma.162.1.S1_atAB029270.1GmMYB13 protein-6e-5At1g56650PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1)C.G.S.X.
0.033e+032Hordeum vulgareEBro08_SQ007_N08_atEBro08_SQ007_N08--2e-1At4g36530hydrolase, alpha/beta fold family proteinC.G.S.X.
0.032e-138Oryza sativaOs01g0722300NM_191815.1-Typical P-type R2R3 Myb protein (Fragment)3e-2At3g27809unknown proteinC.G.S.X.
0.146e-756Populus trichocarpaPtpAffx.224277.1.S1_x_atpmrna42682hypothetical protein-2e-4At1g66390MYB90 (MYB DOMAIN PROTEIN 90)C.G.S.X.
0.031e-138Triticum aestivumTaAffx.113491.1.S1_atCA610965--7e-5At2g36890RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)C.G.S.X.
0.097e-340Vitis vinifera1614575_atCF415112--1e-6At5g14750ATMYB66 (MYB DOMAIN PROTEIN 66)C.G.S.X.
0.033e+032Zea maysZmAffx.1419.1.S1_at40794996-94--3e-124Atmg00830-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0031540Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of anthocyanins.
XGO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
XGO:0009753A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
XGO:0009718The chemical reactions and pathways resulting in the formation of anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins.
XGO:0009745A series of molecular signals mediated by the detection of sucrose.
XGO:0019430Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2).
XGO:0046283The chemical reactions and pathways involving anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins that occur in plants. They are responsible from most of the scarlet, purple, mauve and blue coloring in higher plants, especially of flowers.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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