Gene omics information

Query gene ID At1g56590
Gene name clathrin adaptor complexes medium subunit family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At1g56590842113clathrin adaptor complexes medium subunit family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOPS.X.H.G.
0.8089.8At1g67930843121Golgi transport complex protein-relatedF:unknown;P:unknown;C:chloroplast;OMFBPVS.X.H.G.
0.8089.8At3g24350822024SYP32 (SYNTAXIN OF PLANTS 32)member of Glycoside Hydrolase Family 17S.X.H.G.
0.7385.5At4g18060827531clathrin bindingF:clathrin binding;P:unknown;C:unknown;MOFPBS.X.H.G.
0.5570.6At1g04910839373unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
37.499.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.399.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.399.6GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.899.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.599.6GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.399.6GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.899.5GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.399.5GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.399.5GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.499.5GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-138At3g05740819743RECQI1 (Arabidopsis RecQ helicase l1)F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:DNA recombination;C:cellular_component unknown;BOMFPAVC.G.S.X.
0.026e-136At5g53830835464VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBMC.G.S.X.
0.016e-136At5g43020834317leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.016e-136At3g267825008030-F:unknown;P:unknown;C:mitochondrion;POMFBC.G.S.X.
0.016e-136At3g60050825175pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBAC.G.S.X.
0.016e-136At1g76780844012-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.022e+034At5g13440831185ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeF:metal ion binding;P:oxidation reduction;C:mitochondrion, mitochondrial respiratory chain complex III;OBPMFAC.G.S.X.
0.022e+034At5g13430831184ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeF:metal ion binding;P:oxidation reduction;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;OBPMFAC.G.S.X.
0.012e+034At5g52230835299MBD13Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.277e-2099Glycine maxGmaAffx.49577.1.S1_atBU549109--4e-20At1g56590clathrin adaptor complexes medium subunit family proteinC.G.S.X.
0.028e-238Hordeum vulgareContig21201_atContig21201--1e+0At4g33750-C.G.S.X.
0.103e-757Oryza sativaOs05g0383100AK121835.1-Clathrin adaptor complex, medium chain familyprotein3e-7At1g56590clathrin adaptor complexes medium subunit family proteinC.G.S.X.
0.373e-59230Populus trichocarpaPtpAffx.210842.1.S1_atpmrna21295hypothetical protein-2e-59At1g56590clathrin adaptor complexes medium subunit family proteinC.G.S.X.
0.026e-136Triticum aestivumTaAffx.58659.1.S1_atCA617521--2e+0At3g46000ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)C.G.S.X.
0.033e+032Vitis vinifera1618432_atCB345244hypothetical protein LOC100267315-6e+0At5g13825unknown proteinC.G.S.X.
0.075e-961Zea maysZm.13202.1.A1_atCA403491hypothetical protein LOC100273129-1e-8At1g56590clathrin adaptor complexes medium subunit family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
LGO:0006810The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
LGO:0016192The directed movement of substances into, out of or within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane. Vesicles are then targeted to, and fuse with, an acceptor membrane.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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