Gene omics information

Query gene ID At1g56430
Gene name NAS4 (NICOTIANAMINE SYNTHASE 4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g56430842096NAS4 (NICOTIANAMINE SYNTHASE 4)F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABOS.X.H.G.
0.4558.3At3g07430819931emb1990 (embryo defective 1990)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;BOPS.X.H.G.
0.3338.1At2g22230816756beta-hydroxyacyl-ACP dehydratase, putativeF:3-hydroxybutyryl-[acyl-carrier-protein] dehydratase activity, 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity;P:fatty acid biosynthetic process;C:cell wall, chloroplast;BOPMS.X.H.G.
0.3338.1At3g57560824923aspartate/glutamate/uridylate kinase family proteinencodes a N-acetylglutamate kinase, involved in arginine biosynthesisS.X.H.G.
0.3235.7At2g19940816513N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerizationF:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFPS.X.H.G.
0.3133.8At3g51140824278-F:unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BPOS.X.H.G.
0.3133.8At4g26500828756CPSUFE (CHLOROPLAST SULFUR E)Sulfur acceptor that interacts with and activates the cysteine desulfurases, AtSufS in plastids and AtNifS1 in mitochondria, and both activations are vital during embryogenesis. Dual localization in mitochondria and chloroplasts. Involved in Fe-S cluster biogenesis in mitochondria and plastids. Expressed in all major tissues, with higher expression in green parts. Its expression is light-dependent and regulated at the mRNA level. Activates the cysteine desulfurase activity of CpNifS for chloroplastic iron-sulfur cluster biogenesis.S.X.H.G.
0.2930.3At4g33680829510AGD2 (ABERRANT GROWTH AND DEATH 2)Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139.S.X.H.G.
0.2830.3At1g08640837386unknown proteinF:unknown;P:unknown;C:chloroplast, chloroplast envelope;PBOS.X.H.G.
0.2830.3At5g63570836476GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE)Encodes a protein with homology to glutamate-1-semialdehyde 2,1-aminomutase catalyzing the conversion of glutamate-1-semialdehyde (GSA) into 5-amino levulinate. The expression of this gene was demonstrated to be light-induced.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
104.999.9GSM265474Arabidopsis, whole roots, -Fe, 72 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
103.299.9GSM265473Arabidopsis, whole roots, -Fe, 72 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
81.899.9GSM265471Arabidopsis, whole roots, -Fe, 48 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
76.599.9GSM133293NO.30GSE5698AtGenExpress: Cytokinin treatment of seedlings
62.999.8GSM265472Arabidopsis, whole roots, -Fe, 48 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
49.199.8GSM265430Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
41.099.8GSM105206sta1_no treatement_Rep2GSE4662STA1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover and stress tolerance
35.499.7GSM265432Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
33.899.7GSM131643ATGE_2_AGSE5633AtGenExpress: Developmental series (shoots and stems)
28.999.7GSM131645ATGE_2_CGSE5633AtGenExpress: Developmental series (shoots and stems)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.694e-131468At1g09240837444NAS3 (NICOTIANAMINE SYNTHASE 3)Encodes a nicotianamine synthase.C.G.S.X.
0.271e-1067At5g56080835707NAS2 (NICOTIANAMINE SYNTHASE 2)Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.C.G.S.X.
0.135e-1065At5g04950830377NAS1 (NICOTIANAMINE SYNTHASE 1)Encodes a nicotianamide synthase.C.G.S.X.
0.025e-136At4g26480828754KH domain-containing proteinF:nicotianamine synthase activity, RNA binding, nucleic acid binding;P:nicotianamine biosynthetic process;C:cellular_component unknown;MPFOBC.G.S.X.
0.025e-136At2g39840818571TOPP4Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.C.G.S.X.
0.015e-136At1g68740843205EXS family protein / ERD1/XPR1/SYG1 family proteinEncodes PHO1;H1, a member of the PHO1 family. Involved in inorganic phosphate (Pi) transport and homeostasis. Complements pho1 mutation.C.G.S.X.
0.022e+034At5g53070835387ribosomal protein L9 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMC.G.S.X.
0.022e+034At5g65640836690bHLH093 (beta HLH protein 93)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.037e-136Glycine maxGmaAffx.46756.1.S1_atBQ297035--3e-3At3g15030TCP4 (TCP family transcription factor 4)C.G.S.X.
0.036e-238Hordeum vulgareContig23870_s_atContig23870--2e-1At1g56430NAS4 (NICOTIANAMINE SYNTHASE 4)C.G.S.X.
0.042e-138Oryza sativaOsAffx.30982.1.S1_at---0C.G.S.X.
0.122e-757Populus trichocarpaPtpAffx.31911.1.S1_atCV230740--1e-7At1g09240NAS3 (NICOTIANAMINE SYNTHASE 3)C.G.S.X.
0.033e-550Triticum aestivumTa.5145.2.S1_x_atBJ283281--5e-5At1g56430NAS4 (NICOTIANAMINE SYNTHASE 4)C.G.S.X.
0.072e-652Vitis vinifera1609159_atCF213225hypothetical protein LOC100254544-4e-6At1g56430NAS4 (NICOTIANAMINE SYNTHASE 4)C.G.S.X.
0.023e+032Zea maysZmAffx.465.1.A1_atAI677343DTW domain containing protein-8e-1At1g02450NIMIN1 (NIM1-INTERACTING 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0030418The chemical reactions and pathways resulting in the formation of nicotianamine, 2(S),3'2(S),3''(S)-N-(N-(3-amino-3-carboxypropyl)-3-amino-3-carboxypropyl)-azetidine-2-carboxylic acid.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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