CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g56120

Gene name kinase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At1g56120 842064 kinase F:kinase activity;P:protein amino acid phosphorylation;C:unknown;PMOBFVA S.X. H.G.
0.38 46.7 At1g18390 838420 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.30 32.1 At2g02220 814753 PSKR1 (PHYTOSULFOKIN RECEPTOR 1) Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ). S.X. H.G.
0.30 32.1 At4g04960 825837 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.27 26.2 At1g03740 839423 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVA S.X. H.G.
0.19 12.7 At1g14370 837999 APK2A (PROTEIN KINASE 2A) Encodes protein kinase APK2a. S.X. H.G.
0.17 10.2 At1g76970 844033 VHS domain-containing protein / GAT domain-containing protein F:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, intracellular;MFPOB S.X. H.G.
0.15 7.8 At1g34750 840379 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVA S.X. H.G.
0.15 7.8 At1g70530 843390 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.09 2.8 At1g22280 838835 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:nucleus, plasma membrane;PMOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
110.0 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
96.9 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
85.0 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
64.4 99.8 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
48.2 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
47.0 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
46.9 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.4 99.8 GSM142647 MC002_ATH1_A9.1-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
42.9 99.8 GSM264763 Tween 0.1% 4h GSE10464 Expression data from Arabidopsis thaliana (Ler) rosette leaves treated with paraquat (methyl viologen)
41.4 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.81 0 1959 At1g56140 842066 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.85 0 1937 At1g56130 842065 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane, membrane;PMOBFVA C.G. S.X.
0.42 1e-41 173 At1g56145 842067 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.02 4e-4 48 At1g29730 839851 ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 3e-2 42 At5g60310 836153 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 3e-2 42 At3g28690 822499 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.01 1e-1 40 At1g65190 842826 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFV C.G. S.X.
0.01 1e-1 40 At1g11330 837675 S-locus lectin protein kinase family protein F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 7e-22 107 Glycine max Gma.6650.2.S1_at BU762479 - - 2e-24 At1g56140 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.02 8e-4 46 Hordeum vulgare Contig4998_s_at Contig4998 - - 4e-4 At1g56130 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.03 8e-7 57 Oryza sativa Os08g0202300 AK064482.1 - Leucine-rich repeat, plant specific containingprotein 7e-1 At2g17300 unknown protein C.G. S.X.
0.14 1e-29 133 Populus trichocarpa PtpAffx.207220.1.S1_at pmrna14323 hypothetical protein - 5e-16 At1g56145 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.03 4e-1 38 Triticum aestivum Ta.6542.1.A1_at BJ274437 - - 1e-11 At2g37050 kinase C.G. S.X.
0.06 5e-10 65 Vitis vinifera 1620502_at CF208333 hypothetical protein LOC100256223 - 1e-14 At1g56140 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.02 2e-1 38 Zea mays Zm.359.1.S1_at U82481.1 kinase interacting kinase1 - 2e-6 At3g16030 CES101 (CALLUS EXPRESSION OF RBCS 101) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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