Gene omics information

Query gene ID At1g56060
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7184.2At1g56060842057unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFS.X.H.G.
0.9496.7At2g37430818319zinc finger (C2H2 type) family protein (ZAT11)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;MPOFS.X.H.G.
0.8894.0At1g14540838016anionic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMS.X.H.G.
0.8793.5At1g69930843329ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).S.X.H.G.
0.8290.9At4g28460828963unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.7687.4At1g30370839917lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;PBOFMVS.X.H.G.
0.7687.4At5g24110832476WRKY30member of WRKY Transcription Factor; Group IIIS.X.H.G.
0.7184.2At1g68765843208IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)Encodes a small protein of 77 amino acids. Loss of function mutations are defective in the process of ethylene independent floral organ abscission. Although the mutants have a normal appearing abscission zone, the floral organs do not abscisce. The peptide appears to be secreted and may function as a ligand. Arabidopsis 35S:IDA lines constitutively overexpressing IDA exhibit earlier abscission of floral organs, showing that the abscission zones are responsive to IDA soon after the opening of the flowers. In addition, ectopic abscission was observed at the bases of the pedicel, branches of the inflorescence, and cauline leaves. The silique valves also dehisced prematurely.S.X.H.G.
0.7083.5At2g23270816859unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.6882.2At3g23220821900DNA binding / transcription factorencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
287.0100.0E-MEXP-807-raw-cel-1173273252
271.7100.0E-MEXP-807-raw-cel-1173273144
243.0100.0E-MEXP-807-raw-cel-1173273223
228.1100.0E-MEXP-807-raw-cel-1173273060
204.0100.0GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
201.9100.0GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
190.3100.0E-MEXP-807-raw-cel-1173273170
188.8100.0GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
187.9100.0E-MEXP-807-raw-cel-1173273116
178.1100.0E-MEXP-807-raw-cel-1173273088
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.032e+032At5g14970831349unknown proteinF:unknown;P:unknown;C:unknown;BOPC.G.S.X.
0.022e+032At5g44070834430CAD1 (CADMIUM SENSITIVE 1)Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+.C.G.S.X.
0.012e+032At2g23140816846binding / ubiquitin-protein ligaseF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;OPMFBVAC.G.S.X.
0.012e+032At2g26910817232PDR4 (PLEIOTROPIC DRUG RESISTANCE 4)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMFAPVC.G.S.X.
0.016e+030At5g21080832232-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBC.G.S.X.
0.046e+030At5g17350831601unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PC.G.S.X.
0.026e+030At5g17540831620transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;PFBOC.G.S.X.
0.016e+030At4g04340825754early-responsive to dehydration protein-related / ERD protein-relatedF:unknown;P:unknown;C:plasma membrane;FPMOBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.066e-134Glycine maxHgAffx.16041.1.S1_atCB280315--5e-2At1g75520SRS5 (SHI-RELATED SEQUENCE 5)C.G.S.X.
0.048e-132Hordeum vulgareContig19600_atContig19600--4e-1At1g60670-C.G.S.X.
0.052e-136Oryza sativaOs03g0431100AK058643.1--4e-1At1g56060unknown proteinC.G.S.X.
0.066e-134Populus trichocarpaPtp.1230.1.S1_atCF227747--4e-10At2g41420proline-rich family proteinC.G.S.X.
0.061e-136Triticum aestivumTaAffx.413.1.S1_atBG606829--2e-1At1g56060unknown proteinC.G.S.X.
0.061e-134Vitis vinifera1613847_s_atCB971599hypothetical protein LOC100256616-2e-5At3g57160unknown proteinC.G.S.X.
0.063e-340Zea maysZm.2771.1.A1_atCF014105annexin A7-2e-2At1g56060unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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