CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g55960

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At1g55960 842047 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO S.X. H.G.
0.61 76.7 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins S.X. H.G.
0.50 65.3 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. S.X. H.G.
0.40 50.8 At3g54500 824615 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB S.X. H.G.
0.33 38.1 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
290.8 100.0 E-ATMX-33-raw-cel-1562596264
106.5 99.9 E-ATMX-33-raw-cel-1562596310
74.7 99.9 E-ATMX-33-raw-cel-1562596288
54.4 99.8 E-ATMX-19-raw-cel-1375547445
53.4 99.8 E-ATMX-19-raw-cel-1375547411
45.0 99.8 E-ATMX-19-raw-cel-1375547428
37.9 99.8 GSM131255 AtGen_6-0611_Control-Shoots-24.0h_Rep1 GSE5620 AtGenExpress: Stress Treatments (Control plants)
37.9 99.8 E-MEXP-449-raw-cel-676423067
36.9 99.7 E-ATMX-19-raw-cel-1375547394
34.8 99.7 GSM317519 Apex_5DAS_1 GSE12676 Arabidopsis thaliana Ler developmental series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.49 2e-136 486 At3g13062 820493 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO C.G. S.X.
0.02 2e-1 38 At4g08867 3770196 unknown protein F:unknown;P:unknown;C:unknown;P C.G. S.X.
0.02 6e-1 36 At2g35550 818120 BPC7 (BASIC PENTACYSTEINE 7) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PM C.G. S.X.
0.01 6e-1 36 At1g19880 838576 regulator of chromosome condensation (RCC1) family protein F:Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 9e-4 46 Glycine max PsAffx.psHB040xN04f_at PsAffx.psHB040xN04f - - 4e-4 At1g55960 - C.G. S.X.
0.03 8e-5 48 Hordeum vulgare Contig15026_at Contig15026 - - 2e-4 At1g55960 - C.G. S.X.
0.02 1e-3 46 Oryza sativa Os02g0468400 CB667542 - Lipid-binding START domain containing protein 1e-3 At1g55960 - C.G. S.X.
0.11 4e-18 93 Populus trichocarpa PtpAffx.158815.1.S1_at CN524438 hypothetical protein - 2e-18 At1g55960 - C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.106999.1.S1_s_at CA707945 - - 7e-3 At5g29000 myb family transcription factor C.G. S.X.
0.18 9e-25 113 Vitis vinifera 1621768_at CF513256 - - 3e-24 At1g55960 - C.G. S.X.
0.02 1e+0 34 Zea mays Zm.1779.1.A1_at CF020941 - - 1e+1 At5g64020 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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