Gene omics information

Query gene ID At1g55960
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At1g55960842047-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOS.X.H.G.
0.6176.7At3g02380821298COL2 (constans-like 2)homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteinsS.X.H.G.
0.5065.3At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.S.X.H.G.
0.4050.8At3g54500824615-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBS.X.H.G.
0.3338.1At1g64500842758glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOFS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
37.999.8GSM131255AtGen_6-0611_Control-Shoots-24.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)
34.899.7GSM317519Apex_5DAS_1GSE12676Arabidopsis thaliana Ler developmental series
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.492e-136486At3g13062820493-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOC.G.S.X.
0.022e-138At4g088673770196unknown proteinF:unknown;P:unknown;C:unknown;PC.G.S.X.
0.026e-136At2g35550818120BPC7 (BASIC PENTACYSTEINE 7)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMC.G.S.X.
0.016e-136At1g19880838576regulator of chromosome condensation (RCC1) family proteinF:Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAVC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.149e-446Glycine maxPsAffx.psHB040xN04f_atPsAffx.psHB040xN04f--4e-4At1g55960-C.G.S.X.
0.038e-548Hordeum vulgareContig15026_atContig15026--2e-4At1g55960-C.G.S.X.
0.021e-346Oryza sativaOs02g0468400CB667542-Lipid-binding START domain containing protein1e-3At1g55960-C.G.S.X.
0.114e-1893Populus trichocarpaPtpAffx.158815.1.S1_atCN524438hypothetical protein-2e-18At1g55960-C.G.S.X.
0.023e+034Triticum aestivumTaAffx.106999.1.S1_s_atCA707945--7e-3At5g29000myb family transcription factorC.G.S.X.
0.189e-25113Vitis vinifera1621768_atCF513256--3e-24At1g55960-C.G.S.X.
0.021e+034Zea maysZm.1779.1.A1_atCF020941--1e+1At5g64020unknown proteinC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage