Gene omics information

Query gene ID At1g55830
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g55830842033unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAVS.X.H.G.
0.114.1At3g52570824423ATP bindingF:ATP binding;P:unknown;C:mitochondrion;BOMFPAS.X.H.G.
0.114.1At3g52030824366F-box family protein / WD-40 repeat family proteinF:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBS.X.H.G.
0.082.3At2g27350817278OTU-like cysteine protease family proteinF:cysteine-type peptidase activity;P:biological_process unknown;C:chloroplast;OMPFBVS.X.H.G.
0.082.3At2g41350818733unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBS.X.H.G.
0.082.3At1g22860838891unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBS.X.H.G.
0.051.1At3g17880821056ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
127.999.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
126.399.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
118.599.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
114.099.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
112.599.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
107.099.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
105.999.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
103.299.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
97.699.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
96.799.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-240At5g47950834846transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOC.G.S.X.
0.012e-138At1g72040843535deoxynucleoside kinase familyF:phosphotransferase activity, alcohol group as acceptor, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:nucleus;BOMVPC.G.S.X.
0.016e-136At5g61070836228HDA18Encodes a protein with similarity to histone deacetylases, a class of chromatin remodeling factors which act on H3/H4 histones. Expressed in roots where it appears to regulate the expression of epidermal cell fate genes controlling hair cell differentiation.C.G.S.X.
0.016e-136At4g02540827919DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POMFC.G.S.X.
0.016e-136At2g42090818809ACT9 (ACTIN 9)actin related gene or pseudogene, based on sequence divergence and lack of expressionC.G.S.X.
0.012e+034At3g55830824749EPC1 (ECTOPICALLY PARTING CELLS)A member of the Glycosyltransferase Family 64, homologous to Poplar cambium-expressed GT64 gene. The EPC1 protein plays a critical role during plant development in maintaining the integrity of organs via cell-cell adhesion, thereby providing mechanical strength and facilitating the movement of metabolites throughout the plant.C.G.S.X.
0.012e+034At3g24715822069ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e+034Glycine maxGmaAffx.7220.1.S1_atAW394388--1e-1At1g19660wound-responsive family proteinC.G.S.X.
0.021e+034Hordeum vulgareHV_CEb0015P21f_s_atHV_CEb0015P21f--5e-2At2g13560malate oxidoreductase, putativeC.G.S.X.
0.025e+034Oryza sativaOs06g06273009634.m04071--6e-1Atmg00830-C.G.S.X.
0.069e-446Populus trichocarpaPtpAffx.201303.1.S1_atpmrna2586hypothetical protein-1e-3At1g55830unknown proteinC.G.S.X.
0.026e-136Triticum aestivumTaAffx.31375.2.S1_s_atCA616980--5e-21At2g05990MOD1 (MOSAIC DEATH 1)C.G.S.X.
0.037e-134Vitis vinifera1618957_atCF603287hypothetical protein LOC100263857-6e-27At3g46200aTNUDT9 (Arabidopsis thaliana Nudix hydrolase homolog 9)C.G.S.X.
0.027e-238Zea maysZm.15907.1.A1_atAI691196--3e-1At5g56540AGP14 (ARABINOGALACTAN PROTEIN 14)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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