CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g55690

Gene name SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g55690 842018 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:cellular_component unknown;MPFO S.X. H.G.
0.57 73.8 At1g01510 839401 AN (ANGUSTIFOLIA) Encodes a homolog of human CtBP. Mutant has longer and thicker leaves than wild type. Involved in controlling polar cell expansion in the leaf width direction. S.X. H.G.
0.54 69.5 At1g74690 843808 IQD31 (IQ-domain 31) F:calmodulin binding;P:biological_process unknown;C:cytosol, plasma membrane;MOFPBVA S.X. H.G.
0.50 65.3 At2g20000 816519 HBT (HOBBIT) Required for cell division and cell differentiation in meristems. Encodes a homolog of the CDC27 subunit of the anaphase-promoting complex (APC). Unlike other CDC27 homologs in Arabidopsis, its transcription is cell cycle regulated. Strong hbt mutants give rise to seedlings that lack an anatomically recognizable quiescent center and differentiated columella root cap cells, the cell types derived from the wild-type hypophysis. Furthermore, they have no mitotically active root meristem and lack a differentiated lateral root cap. S.X. H.G.
0.50 65.3 At4g39680 830123 SAP domain-containing protein F:DNA binding, nucleic acid binding;P:biological_process unknown;C:cytosol, nucleus, chloroplast;MPOFBVA S.X. H.G.
0.48 62.5 At5g51660 835240 CPSF160 F:nucleic acid binding;P:mRNA cleavage, mRNA polyadenylation;C:nucleus;MFPO S.X. H.G.
0.46 59.8 At3g61240 825296 DEAD/DEAH box helicase, putative (RH12) F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:unknown;OBMFPAV S.X. H.G.
0.44 57.2 At4g37210 829875 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVA S.X. H.G.
0.44 57.2 At4g32551 829390 LUG (LEUNIG) LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. S.X. H.G.
0.43 55.3 At3g61650 825338 TUBG1 (GAMMA-TUBULIN) Required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
51.0 99.8 E-MEXP-1443-raw-cel-1581869515
47.7 99.8 E-MEXP-1443-raw-cel-1581869573
27.2 99.7 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
17.7 99.5 E-MEXP-728-raw-cel-1062073338
15.3 99.4 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.1 99.4 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.9 99.4 E-TABM-19-raw-cel-489757157
13.9 99.4 GSM133916 Weigel_2-8_CHIP-205-B_Rep2_ATH1 GSE5746 FRI FLC combos
13.3 99.4 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.5 99.3 GSM133403 Bramke_A3-warre-S6C GSE5711 Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 3e-19 97 At1g75370 843873 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative F:transporter activity;P:transport;C:plasma membrane;MPFO C.G. S.X.
0.07 7e-17 89 At4g34580 829610 COW1 (CAN OF WORMS1) Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth. C.G. S.X.
0.16 7e-14 79 At5g56160 835715 transporter F:transporter activity;P:transport;C:cellular_component unknown;MPFOA C.G. S.X.
0.03 1e-12 75 At1g19650 838552 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative F:phosphatidylinositol transporter activity, transporter activity;P:transport;C:plasma membrane;MPFO C.G. S.X.
0.07 4e-12 73 At4g36490 829801 SFH12 (SEC14-LIKE 12) F:phosphatidylinositol transporter activity, transporter activity;P:transport;C:unknown;MPFO C.G. S.X.
0.04 2e-7 57 At4g39180 830073 SEC14 encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-13 79 Glycine max Gma.13151.1.S1_at BG510803 - - 3e-14 At1g55690 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig6304_at Contig6304 - - 2e-1 At2g21540 SFH3 (SEC14-LIKE 3) C.G. S.X.
0.07 8e-3 44 Oryza sativa Os08g0341700 AK120904.1 - Phosphatidylinositol transfer-like protein II 1e-7 At4g34580 COW1 (CAN OF WORMS1) C.G. S.X.
0.41 1e-105 385 Populus trichocarpa PtpAffx.201490.1.S1_s_at pmrna2936 hypothetical protein - 8e-106 At1g55690 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
0.06 3e-7 57 Triticum aestivum Ta.9791.2.S1_at BJ312711 - - 2e-2 At3g24840 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.07 3e-10 65 Vitis vinifera 1621056_at CD713566 hypothetical protein LOC100263435 - 4e-10 At5g56160 transporter C.G. S.X.
0.05 8e-15 81 Zea mays Zm.6096.2.S1_at AJ006545 - - 2e-26 At2g21520 transporter C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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