Gene omics information

Query gene ID At1g55670
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g55670842016PSAG (PHOTOSYSTEM I SUBUNIT G)Encodes subunit G of photosystem I, an 11-kDa membrane protein that plays an important role in electron transport between plastocyanin and PSI and is involved in the stability of the PSI complex. PSI-G subunit is bound to PSI-B and is in contact with Lhca1. The protein inserts into thylakoids by a direct or "spontaneous" pathway that does not involve the activities of any known chloroplast protein-targeting machinery. PSI-G appears to be directly or indirectly involved in the interaction between Photosystem I and plastocyanin.S.X.H.G.
0.9998.1At4g28750828996PSAE-1 (PSA E1 KNOCKOUT)mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Subunit E of Photosystem IS.X.H.G.
0.9797.6At1g30380839918PSAK (photosystem I subunit K)Encodes subunit K of photosystem I reaction center.S.X.H.G.
0.9797.6At1g08380837358PSAO (photosystem I subunit O)Encodes subunit O of photosystem I.S.X.H.G.
0.9697.3At4g12800826892PSAL (photosystem I subunit L)Encodes subunit L of photosystem I reaction center.S.X.H.G.
0.9597.0At1g61520842446LHCA3PSI type III chlorophyll a/b-binding protein (Lhca3*1)S.X.H.G.
0.9396.4At5g66570836789PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO1 is the major isoform in the wild-type.S.X.H.G.
0.9296.0At1g29910839869CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)member of Chlorophyll a/b-binding protein familyS.X.H.G.
0.9296.0At1g06680837178PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.S.X.H.G.
0.9195.6At1g20340838622DRT112recombination and DNA-damage resistance protein (DRT112) One of two Arabidopsis plastocyanin genes. Predominant form, expressed 10x higher than PETE1. PETE2 is thought to be post-transcriptionally regulated via copper accumulation and is involved in copper homeostasis.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
4.798.0GSM157380Truman_1-8_Pst-DC3000(hrpA)-4hpi_Rep3_ATH1GSE6831Systemic response to avirulent bacterial infection
4.097.5GSM159298Col_dark_early_rep3GSE6906Rhythmic growth explained by coincidence between internal and external cues
3.697.1GSM135550brm-101_rep2GSE5806Identification of differentially expressed genes in brm-101 and syd-2 mutants
3.597.0GSM216899ga1-3_shoots_1h_GA4_repl1GSE8739Early gibberellin responses in Arabidopsis
3.597.0GSM128688Helenius_1-1_control-non-treated_Rep1_ATH1GSE5521Comparative ABA-treatment of Col-O vector control and transgenic plants
3.496.8GSM159326CCA1-34_dark_late_rep3GSE6906Rhythmic growth explained by coincidence between internal and external cues
3.496.8GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
3.396.7GSM157351Garnier_1-6_C24-TFE_Rep3_ATH1GSE6828Transcriptome response to change in ploidy level in Arabidopsis
3.396.7GSM269814T6 leaf-well watered-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.016e-238At3g21480821702-F:molecular_function unknown;P:biological_process unknown;C:intracellular;MOPBFAC.G.S.X.
0.016e-238At3g55320824698PGP20 (P-GLYCOPROTEIN 20)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:nucleus, plasma membrane;BOMFAPVC.G.S.X.
0.022e-136At5g20860832209pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMC.G.S.X.
0.042e-136At3g24820822080BSD domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOC.G.S.X.
0.049e-134At4g26810828788SWIB complex BAF60b domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFOMC.G.S.X.
0.039e-134At4g32270829360unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOC.G.S.X.
0.019e-134At3g58620825031TTL4 (Tetratricopetide-repeat Thioredoxin-Like 4)F:binding;P:cell redox homeostasis;C:cellular_component unknown;MBOFPAVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.212e-1273Glycine maxGma.15377.1.S1_atBE821390--2e-12At1g55670PSAG (PHOTOSYSTEM I SUBUNIT G)C.G.S.X.
0.122e-652Hordeum vulgareContig620_atContig620--6e-19At2g34420LHB1B2C.G.S.X.
0.111e-448Oryza sativaOs09g0481200AK098847.1--1e-4At1g55670PSAG (PHOTOSYSTEM I SUBUNIT G)C.G.S.X.
0.202e-24113Populus trichocarpaPtp.2646.1.S1_x_atBU871549hypothetical protein-3e-24At1g55670PSAG (PHOTOSYSTEM I SUBUNIT G)C.G.S.X.
0.044e+032Triticum aestivumTaAffx.95087.1.S1_atCA712868--2e+0At1g55670PSAG (PHOTOSYSTEM I SUBUNIT G)C.G.S.X.
0.223e-1063Vitis vinifera1611924_atCA817406hypothetical protein LOC100244683-2e-9At1g55670PSAG (PHOTOSYSTEM I SUBUNIT G)C.G.S.X.
0.142e-961Zea maysZm.1085.4.A1_atBM349000--7e-9At1g55670PSAG (PHOTOSYSTEM I SUBUNIT G)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009773Electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP.
XGO:0009780The process by which NADP+ is reduced to NADPH. The light reactions of photosynthesis use energy from photons to generate high-energy electrons. These electrons are used directly to reduce NADP+ to NADPH. NADPH is a relatively stable molecule and can pass on its hydrogen atom to other molecules in chemical reactions.
XGO:0042550The stabilization of the photosystem I protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis.
XGO:0015979The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
XGO:0050821Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00195Link to KEGG PATHWAYPhotosynthesis
01100Link to KEGG PATHWAYMetabolic pathways
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